POPTR_0016s05440 (Populus trichocarpa)
CBF/NF-Y

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02045 (CBFB_NFYA) IPR001289 POPTR_0016s05440 T160341_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HAP2
M08452_2.00 		Saccharomyces cerevisiae
TTGGH
DCCAA		 COMPILED
Mathelier et al.(2014)
MA0313.1 		0.708 0.708
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0016s05440.1 CBF/NF-Y 2 25

Links

Other CBF/NF-Y family TFs
Other Populus trichocarpa TFs

258 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000183865 Malus domestica MDP0000183865 I 0.864
Lus10011326.g Linum usitatissimum Lus10011326.g I 0.833
Lus10012202.g Linum usitatissimum Lus10012202.g I 0.833
GLYMA09G02770 Glycine max GLYMA09G02770 N 0.792
GLYMA15G13660 Glycine max GLYMA15G13660 N 0.792
GSMUA_Achr4G03600_001 Musa acuminata GSMUA_Achr4G03600_001 N 0.792
GSMUA_Achr7G01070_001 Musa acuminata GSMUA_Achr7G01070_001 N 0.792
Cla009990 Citrullus lanatus Cla009990 N 0.792
Cucsa.048230 Cucumis sativus Cucsa.048230 N 0.792
Aquca_009_00676 Aquilegia coerulea Aquca_009_00676 N 0.792
Aquca_026_00359 Aquilegia coerulea Aquca_026_00359 N 0.792
Bostr.15697s0348 Boechera stricta Bostr.15697s0348 N 0.792
Cagra.1508s0155 Capsella grandiflora Cagra.1508s0155 N 0.792
Carubv10010359m.g Capsella rubella Carubv10010359m.g N 0.792
Eucgr.A02381 Eucalyptus grandis Eucgr.A02381 N 0.792
orange1.1g019764m.g Citrus sinensis orange1.1g019764m.g N 0.792
PDK_20s1414021g001 Phoenix dactylifera PDK_20s1414021g001 N 0.792
AMTR_s00103p00144230 Amborella trichopoda AMTR_s00103p00144230 I 0.750
BGIOSGA035818 Oryza indica BGIOSGA035818 N 0.750
BRADI4G01380 Brachypodium distachyon BRADI4G01380 N 0.750
F775_09086 Aegilops tauschii F775_09086 N 0.750
GLYMA10G10240 Glycine max GLYMA10G10240 N 0.750
GRMZM2G165488 Zea mays GRMZM2G165488 N 0.750
GSMUA_Achr4G28390_001 Musa acuminata GSMUA_Achr4G28390_001 N 0.750
GSMUA_Achr9G10300_001 Musa acuminata GSMUA_Achr9G10300_001 N 0.750
J056_003714 Wallemia ichthyophaga J056_003714 I 0.750
LPERR12G16030 Leersia perrieri LPERR12G16030 N 0.750
MLOC_76757 Hordeum vulgare MLOC_76757 N 0.750
MTR_2g030170 Medicago truncatula MTR_2g030170 N 0.750
ORUFI12G21270 Oryza rufipogon ORUFI12G21270 N 0.750
OS12G0618600 Oryza sativa OS12G0618600 N 0.750
PGSC0003DMG400011806 Solanum tuberosum PGSC0003DMG400011806 N 0.750
PRUPE_ppa011627mg Prunus persica PRUPE_ppa011627mg N 0.750
Si032469m.g Setaria italica Si032469m.g N 0.750
Traes_5AS_378F353CF Triticum aestivum Traes_5AS_378F353CF N 0.750
Traes_5BS_F1DE20B4B Triticum aestivum Traes_5BS_F1DE20B4B N 0.750
Traes_5DS_443F1993A Triticum aestivum Traes_5DS_443F1993A N 0.750
TRIUR3_28596 Triticum urartu TRIUR3_28596 N 0.750
VIT_08s0007g08250 Vitis vinifera VIT_08s0007g08250 I 0.750
VIT_08s0032g01190 Vitis vinifera VIT_08s0032g01190 N 0.750
VIT_13s0064g00860 Vitis vinifera VIT_13s0064g00860 I 0.750
Ca_07995 Cicer arietinum Ca_07995 N 0.750
Cla015490 Citrullus lanatus Cla015490 I 0.750
Pm010516 Prunus mume Pm010516 N 0.750
cassava2701.m1 Manihot esculenta cassava2701.m1 N 0.750
Cucsa.127910 Cucumis sativus Cucsa.127910 I 0.750
mg014677m Mimulus guttatus mg014677m N 0.750
Bostr.23794s0634 Boechera stricta Bostr.23794s0634 N 0.750
Eucgr.A02570 Eucalyptus grandis Eucgr.A02570 N 0.750
gene18295-v1.0-hybrid Fragaria vesca gene18295-v1.0-hybrid N 0.750
Gorai.004G066000 Gossypium raimondii Gorai.004G066000 I 0.750
Pavir.Ba03783 Panicum virgatum Pavir.Ba03783 N 0.750
Pavir.Bb00319 Panicum virgatum Pavir.Bb00319 N 0.750
SapurV1A.0027s0420 Salix purpurea SapurV1A.0027s0420 N 0.750
SapurV1A.0083s0230 Salix purpurea SapurV1A.0083s0230 N 0.750
SapurV1A.2739s0010 Salix purpurea SapurV1A.2739s0010 N 0.750
Thhalv10017261m.g Eutrema salsugineum Thhalv10017261m.g N 0.750
CAOG_07995 Capsaspora owczarzaki CAOG_07995 I 0.708
CIMG_12689 Coccidioides immitis CIMG_12689 I 0.708
CLUG_05888 Candida lusitaniae CLUG_05888 I 0.708
CPAG_01070 Candida parapsilosis CPAG_01070 I 0.708
MCYG_07480 Microsporum canis MCYG_07480 I 0.708
VDBG_05896 Verticillium albo atrum VDBG_05896 I 0.708
A1O1_05495 Capronia coronata A1O1_05495 I 0.708
A1O3_09102 Capronia epimyces A1O3_09102 I 0.708
A1O5_02864 Cladophialophora psammophila A1O5_02864 I 0.708
A1O7_06785 Cladophialophora yegresii A1O7_06785 I 0.708
A1O9_01381 Exophiala aquamarina A1O9_01381 I 0.708
AACERI_AaceriAFR257W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAFR257W I 0.708
AGOS_AFR257W Ashbya gossypii AGOS_AFR257W I 0.708
NFYA5 Arabidopsis lyrata Al_scaffold_0001_4860 N 0.708
Al_scaffold_0003_1456 Arabidopsis lyrata Al_scaffold_0003_1456 N 0.708
AMTR_s00048p00192930 Amborella trichopoda AMTR_s00048p00192930 I 0.708
ARB_03649 Arthroderma benhamiae ARB_03649 I 0.708
NFYA5 Arabidopsis thaliana AT1G54160 N 0.708
NFYA9 Arabidopsis thaliana AT3G20910 N 0.708
AWRI1499_3546 Brettanomyces bruxellensis AWRI1499_3546 I 0.708
Bcin02g03320 Botrytis cinerea Bcin02g03320 I 0.708
Bo1g134650 Brassica oleracea Bo1g134650 N 0.708
Bo4g039370 Brassica oleracea Bo4g039370 N 0.708
Bo4g121700 Brassica oleracea Bo4g121700 N 0.708
Bo5g105110 Brassica oleracea Bo5g105110 I 0.708
Bo6g050970 Brassica oleracea Bo6g050970 N 0.708
Bra005397 Brassica rapa Bra005397 N 0.708
Bra014368 Brassica rapa Bra014368 N 0.708
Bra021527 Brassica rapa Bra021527 N 0.708
Bra023913 Brassica rapa Bra023913 N 0.708
Bra031242 Brassica rapa Bra031242 I 0.708
Bra037968 Brassica rapa Bra037968 N 0.708
BRADI1G11800 Brachypodium distachyon BRADI1G11800 I 0.708
ACLA_072760 Aspergillus clavatus CADACLAG00007067 I 0.708
CADAFLAG00007032 Aspergillus flavus CADAFLAG00007032 I 0.708
AFUA_2G14720 Aspergillus fumigatus CADAFUAG00004810 I 0.708
CADANGAG00012044 Aspergillus niger CADANGAG00012044 I 0.708
ANIA_07545 Aspergillus nidulans CADANIAG00000651 I 0.708
CADAORAG00008808 Aspergillus oryzae CADAORAG00008808 I 0.708
NFIA_089950 Neosartorya fischeri CADNFIAG00007039 I 0.708
CAGL0H07843g Candida glabrata CAGL0H07843g I 0.708
CANTEDRAFT_116468 Candida tenuis CANTEDRAFT_116468 I 0.708
CaO19.1228 Candida albicans CaO19.1228 I 0.708
CaO19.8814 Candida albicans CaO19.8814 I 0.708
CD36_07150 Candida dubliniensis CD36_07150 I 0.708
CFIO01_03727 Colletotrichum fioriniae CFIO01_03727 I 0.708
CGGC5_14765 Colletotrichum gloeosporioides CGGC5_14765 I 0.708
CH063_08450 Colletotrichum higginsianum CH063_08450 I 0.708
CHGG_05974 Chaetomium globosum CHGG_05974 I 0.708
CLUG_05888 Clavispora lusitaniae CLUG_05888 I 0.708
CMQ_1414 Grosmannia clavigera CMQ_1414 I 0.708
Cob_12224 Colletotrichum orbiculare Cob_12224 I 0.708
CORT_0A07580 Candida orthopsilosis CORT_0A07580 I 0.708
CPC735_040200 Coccidioides posadasii CPC735_040200 I 0.708
CSUB01_09867 Colletotrichum sublineola CSUB01_09867 I 0.708
CTHT_0003560 Chaetomium thermophilum CTHT_0003560 I 0.708
CTRG_03974 Candida tropicalis CTRG_03974 I 0.708
DACRYDRAFT_48176 Dacryopinax sp DACRYDRAFT_48176 I 0.708
DEHA2F26488g Debaryomyces hansenii DEHA2F26488g I 0.708
EFV53177 Trichinella spiralis EFV53177 N 0.708
EPUS_00857 Endocarpon pusillum EPUS_00857 I 0.708
F503_06796 Ophiostoma piceae uamh F503_06796 I 0.708
FFUJ_00859 Fusarium fujikuroi FFUJ_00859 I 0.708
fgenesh1_pg.C_scaffold_286000001 Arabidopsis lyrata fgenesh1_pg.C_scaffold_286000001 N 0.708
FGRRES_00352 Fusarium graminearum FGRRES_00352 I 0.708
FOXG_00707 Fusarium oxysporum FOXG_00707 I 0.708
FPSE_00010 Fusarium pseudograminearum FPSE_00010 I 0.708
FVEG_00807 Fusarium verticillioides FVEG_00807 I 0.708
G210_4220 Candida maltosa G210_4220 I 0.708
G647_03321 Cladophialophora carrionii G647_03321 I 0.708
GGTG_12878 Gaeumannomyces graminis GGTG_12878 I 0.708
GLRG_01314 Colletotrichum graminicola GLRG_01314 I 0.708
GLYMA05G29970 Glycine max GLYMA05G29970 N 0.708
GLYMA07G04050 Glycine max GLYMA07G04050 I 0.708
GMDG_04517 Pseudogymnoascus destructans GMDG_04517 I 0.708
GNLVRS01_PISO0M07338g Millerozyma farinosa GNLVRS01_PISO0M07338g I 0.708
GNLVRS01_PISO0N07471g Millerozyma farinosa GNLVRS01_PISO0N07471g I 0.708
GRMZM2G091964 Zea mays GRMZM2G091964 I 0.708
GSMUA_AchrUn_randomG15140_001 Musa acuminata GSMUA_AchrUn_randomG15140_001 I 0.708
GSTUM_00001625001 Tuber melanosporum GSTUM_00001625001 I 0.708
H101_06169 Trichophyton interdigitale H101_06169 I 0.708
H102_06780 Trichophyton rubrum H102_06780 I 0.708
H105_06820 Trichophyton soudanense H105_06820 I 0.708
HETIRDRAFT_248206 Heterobasidion irregulare HETIRDRAFT_248206 I 0.708
HMPREF1120_07714 Exophiala dermatitidis HMPREF1120_07714 I 0.708
HMPREF1541_08131 Cyphellophora europaea HMPREF1541_08131 I 0.708
HMPREF1624_07645 Sporothrix schenckii HMPREF1624_07645 I 0.708
HPODL_04703 Ogataea parapolymorpha HPODL_04703 I 0.708
KLLA0_A00891g Kluyveromyces lactis KLLA0_A00891g I 0.708
KUCA_T00003294001 Kuraishia capsulata KUCA_T00003294001 I 0.708
LALA0_S06e08218g Lachancea lanzarotensis LALA0_S06e08218g I 0.708
LELG_00868 Lodderomyces elongisporus LELG_00868 I 0.708
LPERR03G22840 Leersia perrieri LPERR03G22840 N 0.708
LPERR03G25340 Leersia perrieri LPERR03G25340 I 0.708
LPERR07G03140 Leersia perrieri LPERR07G03140 N 0.708
LPERR08G05240 Leersia perrieri LPERR08G05240 N 0.708
M378DRAFT_52467 Amanita muscaria M378DRAFT_52467 I 0.708
MAPG_00591 Magnaporthe poae MAPG_00591 I 0.708
MBM_02278 Marssonina brunnea MBM_02278 I 0.708
MCYG_07480 Arthroderma otae MCYG_07480 I 0.708
MGG_00354 Magnaporthe oryzae MGG_00354 I 0.708
MGYG_05253 Microsporum gypseum MGYG_05253 I 0.708
MYCTH_2297059 Myceliophthora thermophila MYCTH_2297059 I 0.708
NechaG98863 Fusarium solani NechaG98863 I 0.708
O9G_001320 Rozella allomycis O9G_001320 I 0.708
OIDMADRAFT_64370 Oidiodendron maius OIDMADRAFT_64370 I 0.708
OMERI07G18960 Oryza meridionalis OMERI07G18960 N 0.708
PAS_chr3_0766 Komagataella pastoris PAS_chr3_0766 I 0.708
PCH_Pc12g01590 Penicillium rubens PCH_Pc12g01590 I 0.708
PDE_06383 Penicillium oxalicum PDE_06383 I 0.708
PDIP_02950 Penicillium digitatum PDIP_02950 I 0.708
PEX1_081380 Penicillium expansum PEX1_081380 I 0.708
PFICI_01568 Pestalotiopsis fici PFICI_01568 I 0.708
PHACADRAFT_54766 Phanerochaete carnosa PHACADRAFT_54766 I 0.708
PHLGIDRAFT_43379 Phlebiopsis gigantea PHLGIDRAFT_43379 I 0.708
PHSY_003968 Pseudozyma hubeiensis PHSY_003968 N 0.708
PICST_61386 Scheffersomyces stipitis PICST_61386 I 0.708
PITC_020830 Penicillium italicum PITC_020830 I 0.708
PMAA_100650 Talaromyces marneffei PMAA_100650 I 0.708
POPTR_0001s38100 Populus trichocarpa POPTR_0001s38100 N 0.708
POPTR_0016s06860 Populus trichocarpa POPTR_0016s06860 N 0.708
PV04_07209 Capronia semiimmersa PV04_07209 I 0.708
PV05_09594 Exophiala xenobiotica PV05_09594 I 0.708
PV06_05449 Exophiala oligosperma PV06_05449 I 0.708
PV07_10918 Cladophialophora immunda PV07_10918 I 0.708
PV08_01898 Exophiala spinifera PV08_01898 I 0.708
PV10_06645 Exophiala mesophila PV10_06645 I 0.708
PV11_09254 Exophiala sideris PV11_09254 I 0.708
PVAR5_8453 Byssochlamys spectabilis PVAR5_8453 I 0.708
Sb01g011220 Sorghum bicolor Sb01g011220 I 0.708
SBOR_3412 Sclerotinia borealis SBOR_3412 I 0.708
NF-YA9 Arabidopsis lyrata scaffold_302497.1 N 0.708
Si037045m.g Setaria italica Si037045m.g I 0.708
Solyc01g087240.2 Solanum lycopersicum Solyc01g087240.2 I 0.708
php2 Schizosaccharomyces pombe SPBC725.11c I 0.708
SPBR_07722 Sporothrix brasiliensis SPBR_07722 I 0.708
SS1G_01725 Sclerotinia sclerotiorum SS1G_01725 I 0.708
SU7_1051 Saccharomyces arboricola SU7_1051 I 0.708
TCM_022984 Theobroma cacao TCM_022984 N 0.708
TCM_040712 Theobroma cacao TCM_040712 I 0.708
THITE_2112524 Thielavia terrestris THITE_2112524 I 0.708
Traes_4AL_7C4C68FD0 Triticum aestivum Traes_4AL_7C4C68FD0 I 0.708
Traes_4BS_B7B7EFF37 Triticum aestivum Traes_4BS_B7B7EFF37 I 0.708
Traes_4DS_AFBE29C20 Triticum aestivum Traes_4DS_AFBE29C20 I 0.708
TRIUR3_09920 Triticum urartu TRIUR3_09920 I 0.708
TRV_01971 Trichophyton verrucosum TRV_01971 I 0.708
TSTA_057980 Talaromyces stipitatus TSTA_057980 I 0.708
U727_00431281391 Penicillium solitum U727_00431281391 I 0.708
UCRPA7_4038 Togninia minima UCRPA7_4038 I 0.708
UREG_01379 Uncinocarpus reesii UREG_01379 I 0.708
V499_07378 Pseudogymnoascus pannorum V499_07378 I 0.708
VDBG_05896 Verticillium alfalfae VDBG_05896 I 0.708
W97_01249 Coniosporium apollinis W97_01249 I 0.708
YALI0_F23111g Yarrowia lipolytica YALI0_F23111g I 0.708
HAP2 Saccharomyces cerevisiae YGL237C D 0.708
Z517_09964 Fonsecaea pedrosoi Z517_09964 I 0.708
Z518_09077 Rhinocladiella mackenziei Z518_09077 I 0.708
Z519_07395 Cladophialophora bantiana Z519_07395 I 0.708
ZYRO0E09372g Zygosaccharomyces rouxii ZYRO0E09372g I 0.708
Cla008690 Citrullus lanatus Cla008690 N 0.708
Pm027028 Prunus mume Pm027028 N 0.708
30075.m001182 Ricinus communis 30075.m001182 N 0.708
Cucsa.124180 Cucumis sativus Cucsa.124180 N 0.708
e_gww1.6.1.1022.1 Pichia stipitis e_gww1.6.1.1022.1 I 0.708
estExt_fgenesh1_pg.C_120063 Sporobolomyces roseus estExt_fgenesh1_pg.C_120063 I 0.708
estExt_fgenesh1_pg.C_420118 Physcomitrella patens estExt_fgenesh1_pg.C_420118 N 0.708
estExt_fgenesh1_pg.C_sca_1_chr1_3_00639 Nectria haematococca estExt_fgenesh1_pg.C_sca_1_chr1_3_00639 I 0.708
gwh2.6.574.1 Phanerochaete chrysosporium gwh2.6.574.1 I 0.708
Bostr.19424s0556 Boechera stricta Bostr.19424s0556 N 0.708
Bostr.7128s0065 Boechera stricta Bostr.7128s0065 N 0.708
Cagra.10399s0005 Capsella grandiflora Cagra.10399s0005 N 0.708
Cagra.20869s0002 Capsella grandiflora Cagra.20869s0002 N 0.708
Carubv10009883m.g Capsella rubella Carubv10009883m.g N 0.708
Carubv10014289m.g Capsella rubella Carubv10014289m.g N 0.708
Eucgr.C00842 Eucalyptus grandis Eucgr.C00842 N 0.708
Eucgr.F03169 Eucalyptus grandis Eucgr.F03169 I 0.708
Eucgr.J00764 Eucalyptus grandis Eucgr.J00764 N 0.708
evm.TU.supercontig_104.9 Carica papaya evm.TU.supercontig_104.9 N 0.708
evm.TU.supercontig_25.96 Carica papaya evm.TU.supercontig_25.96 N 0.708
Gorai.012G010900 Gossypium raimondii Gorai.012G010900 N 0.708
Lus10023358.g Linum usitatissimum Lus10023358.g N 0.708
Lus10038448.g Linum usitatissimum Lus10038448.g N 0.708
MDP0000223651 Malus domestica MDP0000223651 N 0.708
MDP0000506954 Malus domestica MDP0000506954 N 0.708
Pavir.Ia00780 Panicum virgatum Pavir.Ia00780 I 0.708
Pavir.J08102 Panicum virgatum Pavir.J08102 I 0.708
SapurV1A.0258s0010 Salix purpurea SapurV1A.0258s0010 N 0.708
SapurV1A.0980s0030 Salix purpurea SapurV1A.0980s0030 N 0.708
Thhalv10011685m.g Eutrema salsugineum Thhalv10011685m.g N 0.708
PK17701.1 Cannabis sativa PK17701.1 N 0.708
6941_YGL237C Saccharomyces mikatae 6941_YGL237C I 0.708
7676_YGL237C Saccharomyces paradoxus 7676_YGL237C I 0.708
7831_YGL237C Saccharomyces bayanus 7831_YGL237C I 0.708
EDP44549.1 Malassezia globosa EDP44549.1 I 0.708
estExt_Genewise1Plus.C_140165 Cryphonectria parasitica estExt_Genewise1Plus.C_140165 I 0.708
fgenesh1_pg.00815_#_160 Aspergillus carbonarius fgenesh1_pg.00815_#_160 I 0.708
Pc12g01590 Penicillium chrysogenum Pc12g01590 I 0.708
PMAA_100650 Penicillium marneffei PMAA_100650 I 0.708
SAKL0F00990g Lachancea kluyveri SAKL0F00990g I 0.708
XP_002492996.1 Pichia pastoris XP_002492996.1 I 0.708
D917_07883 Trichinella nativa D917_07883 N 0.708