CBG16279 (Caenorhabditis briggsae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 CBG16279 T326867_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.435 0.377
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.435 0.377
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.435 0.377
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.435 0.377
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.435 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBG16279 Sox 64 132

Links

Other Sox family TFs
Other Caenorhabditis briggsae TFs

80 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACHR006211 Anopheles christyi ACHR006211 N
AMEM003228 Anopheles merus AMEM003228 N
AMEC012325 Anopheles melas AMEC012325 N
AMAM022417 Anopheles maculatus AMAM022417 N
AFUN001272 Anopheles funestus AFUN001272 N
AFAF001135 Anopheles farauti AFAF001135 N
AEPI009418 Anopheles epiroticus AEPI009418 N
ADIR010123 Anopheles dirus ADIR010123 N
ACUA025632 Anopheles culicifacies ACUA025632 N
ACOM033657 Anopheles coluzzii ACOM033657 N
AMIN002364 Anopheles minimus AMIN002364 N
AATE004647 Anopheles atroparvus AATE004647 N
AARA006496 Anopheles arabiensis AARA006496 N
AALB009551 Anopheles albimanus AALB009551 N
Minc06622 Meloidogyne incognita Minc06622 N
LDEC007066 Leptinotarsa decemlineata LDEC007066 N
LCUP007789 Lucilia cuprina LCUP007789 N
CLEC008450 Cimex lectularius CLEC008450 N
Hsal_02676--XP_625055.2_APIME Harpegnathos saltator Hsal_02676--XP_625055.2_APIME N
L898_g14011 Steinernema monticolum L898_g14011 N
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N
SSTP_0001127200 Strongyloides stercoralis SSTP_0001127200 N
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N
Cflo_01038--XP_625055.2_APIME Camponotus floridanus Cflo_01038--XP_625055.2_APIME N
L889_g13125 Steinernema feltiae L889_g13125 N
augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf00485-processed-gene-0.1 N
PPAI002532 Phlebotomus papatasi PPAI002532 N
MDOA008474 Musca domestica MDOA008474 N
LLOJ004028 Lutzomyia longipalpis LLOJ004028 N
ASTEI10740 Anopheles stephensi ASTEI10740 N
ASIS018375 Anopheles sinensis ASIS018375 N
AQUA001810 Anopheles quadriannulatus AQUA001810 N
CBN31697 Caenorhabditis brenneri CBN31697 N
GI24041 Drosophila mojavensis FBgn0146764 N
GH18462 Drosophila grimshawi FBgn0125929 N
GG12321 Drosophila erecta FBgn0104611 N
GF23180 Drosophila ananassae FBgn0100174 N
GA10956 Drosophila pseudoobscura FBgn0071012 N
polybromo Drosophila melanogaster FBgn0039227 N
DAPPUDRAFT_304382 Daphnia pulex DAPPUDRAFT_304382 N
CRE14258 Caenorhabditis remanei CRE14258 N
CPIJ007271 Culex quinquefasciatus CPIJ007271 N
GL13862 Drosophila persimilis FBgn0151467 N
CBN07735 Caenorhabditis brenneri CBN07735 N
CBG11867 Caenorhabditis briggsae CBG11867 N
BGIBMGA010711 Bombyx mori BGIBMGA010711 N
AGAP001099 Anopheles gambiae AGAP001099 N
ADAC005840 Anopheles darlingi ADAC005840 N
ACYPI001480 Acyrthosiphon pisum ACYPI001480 N
ACEP25803 Atta cephalotes ACEP25803 N
AAEL000181 Aedes aegypti AAEL000181 N
L798_12146 Zootermopsis nevadensis L798_12146 N
pbrm-1 Caenorhabditis elegans WBGene00007042 N
tetur21g01330 Tetranychus urticae tetur21g01330 N
TC000618 Tribolium castaneum TC000618 N
SMAR009325 Strigamia maritima SMAR009325 N
SINV16486 Solenopsis invicta SINV16486 N
RPRC014309 Rhodnius prolixus RPRC014309 N
PHUM244090 Pediculus humanus PHUM244090 N
MESCA007902 Megaselia scalaris MESCA007902 N
CpipJ_CPIJ007271 Culex pipiens CpipJ_CPIJ007271 N
KGM_06850 Danaus plexippus KGM_06850 N
ISCW005293 Ixodes scapularis ISCW005293 N
HMEL006186 Heliconius melpomene HMEL006186 N
GB42921 Apis mellifera GB42921 N
GE10775 Drosophila yakuba FBgn0228617 N
GK13168 Drosophila willistoni FBgn0215177 N
GJ23670 Drosophila virilis FBgn0210767 N
GM22062 Drosophila sechellia FBgn0176933 N