CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

ENSSTOG00000011011 *(Ictidomys tridecemlineatus)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00505 (HMG_box)	IPR000910	ENSSTOG00000011011	T329166_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
SOX2 M03519_2.00	Homo sapiens	DAACAATGKYAKTGTTN	NAACAMTRMCATTGTTH	SELEX Jolma et al.(2013) SOX2_1	0.477	1.000
SOX2 M03520_2.00	Homo sapiens	VTGAATGDYATTCAN	NTGAATRHCATTCAB	SELEX Jolma et al.(2013) SOX2_2	0.477	1.000
SOX2 M03521_2.00	Homo sapiens	NATCAATGNYATTGAWD	HWTCAATRNCATTGATN	SELEX Jolma et al.(2013) SOX2_3	0.477	1.000
SOX2 M03522_2.00	Homo sapiens	NAACAATANCATTGTTH	DAACAATGNTATTGTTN	SELEX Jolma et al.(2013) SOX2_4	0.477	1.000
SOX2 M03523_2.00	Homo sapiens	HATCAATANCATTGATH	DATCAATGNTATTGATD	SELEX Jolma et al.(2013) SOX2_5	0.477	1.000
SOX2 M03524_2.00	Homo sapiens	DTGAATWNCATTCAH	DTGAATGNWATTCAH	SELEX Jolma et al.(2013) SOX2_6	0.477	1.000
SOX2 M05897_2.00	Homo sapiens	NACAAWRRNN	NNYYWTTGTN	SMiLE-seq Isakova et al.(2017) SOX2	0.477	1.000
Sox2 M08170_2.00	Mus musculus	CCWTTGTB	VACAAWGG	ChIP-seq Mathelier et al.(2014) MA0143.3	0.477	1.000
Sox2 M08041_2.00	Mus musculus	WHWRMADNACAAWRR	YYWTTGTNHTKYWDW	ChIP-seq Chen et al.(2011) SRP000217_Sox2	0.477	1.000
Sox2 M08042_2.00	Mus musculus	TTWRCATNWSAAWRV	BYWTTSWNATGYWAA	ChIP-seq Chen et al.(2011) SRP000712_Sox2	0.477	1.000
SOX2 M09397_2.00	Homo sapiens	BBYYWTTGTBYBB	VVRVACAAWRRVV	Misc Kulakovskiy et al.(2013) SOX2_HUMAN.H11MO.0.A	0.477	1.000
Sox2 M09409_2.00	Mus musculus	THWRCATNACAAWRRV	BYYWTTGTNATGYWDA	Misc Kulakovskiy et al.(2013) SOX2_MOUSE.H11MO.0.A	0.477	1.000
SOX2 M11327_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3_01	0.477	1.000
SOX2 M11328_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q3	0.477	1.000
SOX2 M11329_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q4	0.477	1.000
SOX2 M11330_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX2_Q6	0.477	1.000
Sox1 M00214_2.00	Mus musculus	NNNNNWBAAW	WTTVWNNNNN	PBM Badis et al.(2009) Sox1_2631	0.477	0.945
Sox1 M03542_2.00	Mus musculus	VACAATWNCATTGTT	AACAATGNWATTGTB	SELEX Jolma et al.(2013) Sox1_1	0.477	0.945
Sox1 M03543_2.00	Mus musculus	NTGAATWNCATTCAN	NTGAATGNWATTCAN	SELEX Jolma et al.(2013) Sox1_2	0.477	0.945
Sox1 M03544_2.00	Mus musculus	TCAATWNCATTGA	TCAATGNWATTGA	SELEX Jolma et al.(2013) Sox1_3	0.477	0.945
Sox1 M03545_2.00	Mus musculus	TGAATDDNHATTCA	TGAATDNHHATTCA	SELEX Jolma et al.(2013) Sox1_4	0.477	0.945
Sox21a M03978_2.00	Drosophila melanogaster	NMACAMTAVCATTGTKN	NMACAATGBTAKTGTKN	SELEX Nitta et al.(2015) Sox21a_1	0.465	0.927
Sox21a M03979_2.00	Drosophila melanogaster	NNACAMTANCATTGTYH	DRACAATGNTAKTGTNN	SELEX Nitta et al.(2015) Sox21a_2	0.465	0.927
D M03969_2.00	Drosophila melanogaster	AMVGAACAAT	ATTGTTCBKT	SELEX Nitta et al.(2015) D_1	0.455	0.891
D M03970_2.00	Drosophila melanogaster	NAACAATDNCATTGTTN	NAACAATGNHATTGTTN	SELEX Nitta et al.(2015) D_2	0.455	0.891
D M06559_2.00	Drosophila melanogaster	BCYWTTGTTNT	ANAACAAWRGV	B1H Mathelier et al.(2014) MA0445.1	0.455	0.891
D M06448_2.00	Drosophila melanogaster	BCYATTGTYNW	WNRACAATRGV	B1H Zhu et al.(2011) D_NAR_FBgn0000411	0.455	0.891
D M09694_2.00	Drosophila melanogaster	RACAAWRGVH	DBCYWTTGTY	Misc Kulakovskiy et al.(2009) D	0.455	0.891
Sox14 M00829_2.00	Mus musculus	NAACAATD	HATTGTTN	PBM Weirauch et al.(2013) pTH2677	0.450	0.945
Sox14 M00206_2.00	Mus musculus	NNNABAAW	WTTVTNNN	PBM Badis et al.(2009) Sox14_2677	0.450	0.945
SOX14 M03513_2.00	Homo sapiens	ACAMTAMCATTG	CAATGKTAKTGT	SELEX Jolma et al.(2013) SOX14_1	0.450	0.945
SOX14 M03514_2.00	Homo sapiens	NTGAATANCATTCAN	NTGAATGNTATTCAN	SELEX Jolma et al.(2013) SOX14_2	0.450	0.945
SOX14 M03515_2.00	Homo sapiens	TCAATWVCATTGA	TCAATGBWATTGA	SELEX Jolma et al.(2013) SOX14_3	0.450	0.945
SOX14 M05783_2.00	Homo sapiens	NYATTGWNNN	NNNWCAATRN	SELEX Yin et al.(2017) SOX14_eDBD_HT-SELEX	0.450	0.945
SOX14 M05785_2.00	Homo sapiens	NCGAACAATK	MATTGTTCGN	SELEX Yin et al.(2017) SOX14_FL_HT-SELEX	0.450	0.945
SOX14 M05784_2.00	Homo sapiens	NYATTGTNNN	NNNACAATRN	SELEX Yin et al.(2017) SOX14_eDBD_Methyl-HT-SELEX	0.450	0.945
SOX14 M05786_2.00	Homo sapiens	NATTGTTYGB	VCRAACAATN	SELEX Yin et al.(2017) SOX14_FL_Methyl-HT-SELEX	0.450	0.945
SoxN M03976_2.00	Drosophila melanogaster	VYGHACARTNN	NNAYTGTDCRB	SELEX Nitta et al.(2015) SoxN_1	0.445	0.891
SoxN M03977_2.00	Drosophila melanogaster	NCAATNVCATTGN	NCAATGBNATTGN	SELEX Nitta et al.(2015) SoxN_2	0.445	0.891
Sox21 M00208_2.00	Mus musculus	WTTVWNNNN	NNNNWBAAW	PBM Badis et al.(2009) Sox21_3417	0.443	0.945
SOX21 M03497_2.00	Homo sapiens	AACAATKKYAKTGTT	AACAMTRMMATTGTT	SELEX Jolma et al.(2013) SOX21_1	0.443	0.945
SOX21 M03498_2.00	Homo sapiens	AACAATRKDYAKTGTT	AACAMTRHMYATTGTT	SELEX Jolma et al.(2013) SOX21_2	0.443	0.945
SOX21 M03499_2.00	Homo sapiens	TCAATGDYAKTGA	TCAMTRHCATTGA	SELEX Jolma et al.(2013) SOX21_3	0.443	0.945
SOX21 M03500_2.00	Homo sapiens	TGAATGKYAKTCA	TGAMTRMCATTCA	SELEX Jolma et al.(2013) SOX21_4	0.443	0.945
Sox3 M00827_2.00	Mus musculus	WDTVHNNN	NNNDBAHW	PBM Weirauch et al.(2013) pTH3087	0.433	0.873
Sox3 M03538_2.00	Mus musculus	RAACAATRNYATTGTTK	MAACAATRNYATTGTTY	SELEX Jolma et al.(2013) Sox3_1	0.433	0.873
Sox3 M03539_2.00	Mus musculus	BATCAATGBYATTGATD	HATCAATRVCATTGATV	SELEX Jolma et al.(2013) Sox3_2	0.433	0.873
Sox3 M03540_2.00	Mus musculus	DATGAATKNYATTCATR	YATGAATRNMATTCATH	SELEX Jolma et al.(2013) Sox3_3	0.433	0.873
SOX3 M05769_2.00	Homo sapiens	VYATTKTNVS	SBNAMAATRB	SELEX Yin et al.(2017) SOX3_FL_HT-SELEX	0.433	0.873
Sox3 M08168_2.00	Mus musculus	CCTTTGTYYB	VRRACAAAGG	ChIP-seq Mathelier et al.(2014) MA0514.1	0.433	0.873
SOX3 M09391_2.00	Homo sapiens	BYCWTTGTBYB	VRVACAAWGRV	Misc Kulakovskiy et al.(2013) SOX3_HUMAN.H11MO.0.B	0.433	0.873
Sox3 M09405_2.00	Mus musculus	VRVACAAWGGV	BCCWTTGTBYB	Misc Kulakovskiy et al.(2013) SOX3_MOUSE.H11MO.0.C	0.433	0.873
Sox3 M09639_2.00	Mus musculus	VACAAWRG	CYWTTGTB	Misc Heinz et al.(2010) NPC-Sox3_GSE33059	0.433	0.873
SOX3 M05770_2.00	Homo sapiens	BYATTGTBNN	NNVACAATRV	SELEX Yin et al.(2017) SOX3_FL_Methyl-HT-SELEX	0.433	0.873
Sox21b M03983_2.00	Drosophila melanogaster	NAACAMTWNCAKTGTTB	VAACAMTGNWAKTGTTN	SELEX Nitta et al.(2015) Sox21b_1	0.428	0.909
SOX15 M03508_2.00	Homo sapiens	AACAATAMCATTGTT	AACAATGKTATTGTT	SELEX Jolma et al.(2013) SOX15_1	0.418	0.782
SOX15 M03509_2.00	Homo sapiens	ATCAATAMCATTGAT	ATCAATGKTATTGAT	SELEX Jolma et al.(2013) SOX15_2	0.418	0.782
SOX15 M03510_2.00	Homo sapiens	ATGAATAACATTCAT	ATGAATGTTATTCAT	SELEX Jolma et al.(2013) SOX15_3	0.418	0.782
SOX15 M05893_2.00	Homo sapiens	YYWTTGTNHN	NDNACAAWRR	SMiLE-seq Isakova et al.(2017) SOX15	0.418	0.782
SOX15 M11308_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$SOX15_Q3	0.418	0.782
Sox15 M00202_2.00	Mus musculus	WTTVWNNNN	NNNNWBAAW	PBM Badis et al.(2009) Sox15_3457	0.418	0.764
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ENSSTOP00000009872	Sox	1	55	QRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYK

Links
Other Sox family TFs
Other *Ictidomys tridecemlineatus* TFs

780 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ZNF653	Homo sapiens	ENSG00000161914	D	0.000
znf653	Oryzias latipes	ENSORLG00000016563	I	0.000
ENSONIG00000008038	Oreochromis niloticus	ENSONIG00000008038	I	0.000
ENSPANG00000016446	Papio anubis	ENSPANG00000016446	I	0.000
ENSPFOG00000003530	Poecilia formosa	ENSPFOG00000003530	I	0.000
ENSPPYG00000009584	Pongo abelii	ENSPPYG00000009584	I	0.000
ZNF653	Pan troglodytes	ENSPTRG00000010507	I	0.000
ZNF653	Pteropus vampyrus	ENSPVAG00000014895	I	0.000
Zfp653	Rattus norvegicus	ENSRNOG00000014065	I	0.000
ZNF653	Sus scrofa	ENSSSCG00000013616	I	0.000
ENSSTOG00000003640	Ictidomys tridecemlineatus	ENSSTOG00000003640	I	0.000
ZNF653	Tursiops truncatus	ENSTTRG00000001794	I	0.000
Alligator_sinensis_CCG017936.1	Alligator sinensis	Alligator_sinensis_CCG017936.1	I	0.000
Cmyd_10005916	Chelonia mydas	Cmyd_10005916	I	0.000
ENSMMUP00000027145	Macaca fascicularis	ENSMMUP00000027145	I	0.000
Myotis_brandtii_Znf653_10003855	Myotis brandtii	Myotis_brandtii_Znf653_10003855	I	0.000
Ogr06398	Ophisaurus gracilis	Ogr06398	I	0.000
Pvit_14576	Pogona vitticeps	Pvit_14576	I	0.000
ENSACAG00000016965	Anolis carolinensis	ENSACAG00000016965	I	0.000
ZNF653	Otolemur garnettii	ENSOGAG00000007074	I	0.000
ENSOANG00000012102	Ornithorhynchus anatinus	ENSOANG00000012102	I	0.000
ENSNLEG00000012591	Nomascus leucogenys	ENSNLEG00000012591	I	0.000
Zfp653	Mus musculus	ENSMUSG00000038895	I	0.000
ENSMPUG00000005002	Mustela putorius furo	ENSMPUG00000005002	I	0.000
ZNF653	Macaca mulatta	ENSMMUG00000020617	I	0.000
ZNF653	Myotis lucifugus	ENSMLUG00000016337	I	0.000
ZNF653	Felis catus	ENSFCAG00000004922	I	0.000
znf653	Danio rerio	ENSDARG00000093469	I	0.000
ENSCSAG00000006753	Chlorocebus sabaeus	ENSCSAG00000006753	I	0.000
ZNF653	Cavia porcellus	ENSCPOG00000010842	I	0.000
ZNF653	Callithrix jacchus	ENSCJAG00000005551	I	0.000
ZNF653	Canis familiaris	ENSCAFG00000031712	I	0.000
ENSAMXG00000005448	Astyanax mexicanus	ENSAMXG00000005448	I	0.000
ENSAMEG00000010478	Ailuropoda melanoleuca	ENSAMEG00000010478	I	0.000

ENSSTOG00000011011 (Ictidomys tridecemlineatus) Sox

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

780 Related TFs

ENSSTOG00000011011 **(Ictidomys tridecemlineatus)
Sox**