Alligator_sinensis_CCG017936.1 (Alligator sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Alligator_sinensis_CCG017936.1 T133385_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZNF653
M08248_2.00 		Homo sapiens
NWTTHNYDHCYKCCGACWNHWAWD
HWTWDNWGTCGGMRGDHRNDAAWN		 ChIP-seq
Najafabadi et al.(2015b)
ZNF653 		0.812 0.948
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Alligator_sinensis_CCG017936.1 C2H2 ZF 391 416
Alligator_sinensis_CCG017936.1 C2H2 ZF 422 445
Alligator_sinensis_CCG017936.1 C2H2 ZF 452 474
Alligator_sinensis_CCG017936.1 C2H2 ZF 480 502
Alligator_sinensis_CCG017936.1 C2H2 ZF 510 533

Links

Other C2H2 ZF family TFs
Other Alligator sinensis TFs

34 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSACAG00000016965 Anolis carolinensis ENSACAG00000016965 I 0.814
ENSAMEG00000010478 Ailuropoda melanoleuca ENSAMEG00000010478 I 0.814
ZNF653 Bos taurus ENSBTAG00000014415 I 0.814
ZNF653 Canis familiaris ENSCAFG00000031712 I 0.814
ZNF653 Cavia porcellus ENSCPOG00000010842 I 0.814
ZNF653 Felis catus ENSFCAG00000004922 I 0.814
ZNF653 Myotis lucifugus ENSMLUG00000016337 I 0.814
ENSMPUG00000005002 Mustela putorius furo ENSMPUG00000005002 I 0.814
ZNF653 Otolemur garnettii ENSOGAG00000007074 I 0.814
ZNF653 Pteropus vampyrus ENSPVAG00000014895 I 0.814
ZNF653 Sus scrofa ENSSSCG00000013616 I 0.814
ZNF653 Tursiops truncatus ENSTTRG00000001794 I 0.814
Myotis_brandtii_Znf653_10003855 Myotis brandtii Myotis_brandtii_Znf653_10003855 I 0.814
Ogr06398 Ophisaurus gracilis Ogr06398 I 0.814
Pvit_14576 Pogona vitticeps Pvit_14576 I 0.814
ZNF653 Callithrix jacchus ENSCJAG00000005551 I 0.812
ENSCSAG00000006753 Chlorocebus sabaeus ENSCSAG00000006753 I 0.812
ZNF653 Homo sapiens ENSG00000161914 D 0.812
ZNF653 Macaca mulatta ENSMMUG00000020617 I 0.812
Zfp653 Mus musculus ENSMUSG00000038895 I 0.812
ENSNLEG00000012591 Nomascus leucogenys ENSNLEG00000012591 I 0.812
ENSPANG00000016446 Papio anubis ENSPANG00000016446 I 0.812
ENSPPYG00000009584 Pongo abelii ENSPPYG00000009584 I 0.812
ZNF653 Pan troglodytes ENSPTRG00000010507 I 0.812
Zfp653 Rattus norvegicus ENSRNOG00000014065 I 0.812
ENSMMUP00000027145 Macaca fascicularis ENSMMUP00000027145 I 0.805
ENSOANG00000012102 Ornithorhynchus anatinus ENSOANG00000012102 I 0.803
Cmyd_10005916 Chelonia mydas Cmyd_10005916 I 0.803
ENSAMXG00000005448 Astyanax mexicanus ENSAMXG00000005448 I 0.785
ENSONIG00000008038 Oreochromis niloticus ENSONIG00000008038 I 0.785
znf653 Oryzias latipes ENSORLG00000016563 I 0.785
ENSPFOG00000003530 Poecilia formosa ENSPFOG00000003530 I 0.785
znf653 Danio rerio ENSDARG00000093469 I 0.781
ENSSTOG00000003640 Ictidomys tridecemlineatus ENSSTOG00000003640 I 0.768