OGLUM02G11100 (Oryza glumaepatula)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 OGLUM02G11100 T331589_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.423 0.584
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.423 0.584
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OGLUM02G11100.1 Sox 157 222
OGLUM02G11100.1 Sox 285 351
OGLUM02G11100.1 Sox 414 482

Links

Other Sox family TFs
Other Oryza glumaepatula TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BPC5 Arabidopsis thaliana AT4G38910 D
Bo7g119540 Brassica oleracea Bo7g119540 I
scaffold_200704.1 Arabidopsis lyrata scaffold_200704.1 I
Ocbimv22014894m.g Octopus bimaculoides Ocbimv22014894m.g I
Bostr.25542s0071 Boechera stricta Bostr.25542s0071 I
Thhalv10025867m.g Eutrema salsugineum Thhalv10025867m.g I
BPC4 Arabidopsis thaliana AT2G21240 N
Bo4g145820 Brassica oleracea Bo4g145820 N
Bra030308 Brassica rapa Bra030308 N
BPC4 Arabidopsis lyrata fgenesh2_kg.4__42__AT2G21240.1 N
Bostr.5022s0111 Boechera stricta Bostr.5022s0111 N
Cagra.2961s0028 Capsella grandiflora Cagra.2961s0028 N
Carubv10023579m.g Capsella rubella Carubv10023579m.g N
Thhalv10000273m.g Eutrema salsugineum Thhalv10000273m.g N