POPTR_0017s08230 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0017s08230 T332139_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s08230.1 Sox 87 154

Links

Other Sox family TFs
Other Populus trichocarpa TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CXXC1 Homo sapiens ENSG00000154832 D
BAD93120.1_CONSTRUCT PBM CONSTRUCTS BAD93120.1_CONSTRUCT D
ENSSARG00000002011 Sorex araneus ENSSARG00000002011 I
CXXC1 Tursiops truncatus ENSTTRG00000015535 I
cxxc1b Takifugu rubripes ENSTRUG00000013293 I
cxxc1a Takifugu rubripes ENSTRUG00000005220 I
cxxc1b Tetraodon nigroviridis ENSTNIG00000007325 I
cxxc1a Tetraodon nigroviridis ENSTNIG00000001822 I
ENSSTOG00000029092 Ictidomys tridecemlineatus ENSSTOG00000029092 I
CXXC1 Sus scrofa ENSSSCG00000004517 I
ENSSHAG00000003967 Sarcophilus harrisii ENSSHAG00000003967 I
ENSXMAG00000013043 Xiphophorus maculatus ENSXMAG00000013043 I
Cxxc1 Rattus norvegicus ENSRNOG00000014614 I
CXXC1 Pteropus vampyrus ENSPVAG00000015608 I
CXXC1 Pan troglodytes ENSPTRG00000010022 I
ENSPSIG00000008595 Pelodiscus sinensis ENSPSIG00000008595 I
ENSPFOG00000007618 Poecilia formosa ENSPFOG00000007618 I
ENSPFOG00000001601 Poecilia formosa ENSPFOG00000001601 I
ENSPANG00000009435 Papio anubis ENSPANG00000009435 I
ENSORLG00000019591 Oryzias latipes ENSORLG00000019591 I
Ogr11309 Ophisaurus gracilis Ogr11309 I
XP_002943289 Xenopus tropicalis XP_002943289 I
cxxc1.S Xenopus laevis XB-GENE-5910788 I
cxxc1 Xenopus tropicalis XB-GENE-5910691 I
Sakowv30043410m.g Saccoglossus kowalevskii Sakowv30043410m.g I
Ocbimv22022574m.g Octopus bimaculoides Ocbimv22022574m.g I
estExt_fgenesh2_pg.C_1650087 Branchiostoma floridae estExt_fgenesh2_pg.C_1650087 I
estExt_fgenesh2_pg.C_1650060 Branchiostoma floridae estExt_fgenesh2_pg.C_1650060 I
Pvit_00275 Pogona vitticeps Pvit_00275 I
ENSXMAG00000005630 Xiphophorus maculatus ENSXMAG00000005630 I
ENSP00000390475 Macaca fascicularis ENSP00000390475 I
ENSP00000390475-D1 Bos grunniens ENSP00000390475-D1 I
Cmyd_10001830 Chelonia mydas Cmyd_10001830 I
Alligator_sinensis_CCG018976.1 Alligator sinensis Alligator_sinensis_CCG018976.1 I
SPU_002500 Strongylocentrotus purpuratus SPU_002500 I
SMAR003348 Strigamia maritima SMAR003348 I
HelroG112476 Helobdella robusta HelroG112476 I
ENSONIG00000020290 Oreochromis niloticus ENSONIG00000020290 I
ENSCJAG00000005472 Callithrix jacchus ENSCJAG00000005472 I
cxxc1b Gasterosteus aculeatus ENSGACG00000012117 I
cxxc1a Gasterosteus aculeatus ENSGACG00000001153 I
CXXC1 Felis catus ENSFCAG00000006135 I
CXXC1 Equus caballus ENSECAG00000017698 I
CXXC1 Dasypus novemcinctus ENSDNOG00000032991 I
cxxc1a Danio rerio ENSDARG00000101996 I
cxxc1b Danio rerio ENSDARG00000025718 I
ENSCSAG00000018072 Chlorocebus sabaeus ENSCSAG00000018072 I
CXXC1 Cavia porcellus ENSCPOG00000020250 I
CXXC1 Gorilla gorilla ENSGGOG00000016976 I
ENSCJAG00000005044 Callithrix jacchus ENSCJAG00000005044 I
CXXC1 Canis familiaris ENSCAFG00000018892 I
CXXC1 Bos taurus ENSBTAG00000021884 I
ENSAPLG00000005571 Anas platyrhynchos ENSAPLG00000005571 I
ENSAMXG00000016944 Astyanax mexicanus ENSAMXG00000016944 I
ENSAMXG00000006383 Astyanax mexicanus ENSAMXG00000006383 I
ENSAMEG00000000259 Ailuropoda melanoleuca ENSAMEG00000000259 I
CXXC1 Anolis carolinensis ENSACAG00000006087 I
ENSMPUG00000008831 Mustela putorius furo ENSMPUG00000008831 I
CGI_10003574 Crassostrea gigas CGI_10003574 I
ENSONIG00000000828 Oreochromis niloticus ENSONIG00000000828 I
CXXC1 Otolemur garnettii ENSOGAG00000033715 I
CXXC1 Oryctolagus cuniculus ENSOCUG00000025756 I
ENSOARG00000004310 Ovis aries ENSOARG00000004310 I
CXXC1 Ornithorhynchus anatinus ENSOANG00000014594 I
ENSNLEG00000011746 Nomascus leucogenys ENSNLEG00000011746 I
Cxxc1 Mus musculus ENSMUSG00000024560 I
CXXC1 Ochotona princeps ENSOPRG00000013787 I
CXXC1 Monodelphis domestica ENSMODG00000010555 I
CXXC1 Macaca mulatta ENSMMUG00000009051 I
CXXC1 Myotis lucifugus ENSMLUG00000025328 I
CXXC1 Microcebus murinus ENSMICG00000006424 I
ENSMEUG00000001457 Macropus eugenii ENSMEUG00000001457 I
ENSLOCG00000014684 Lepisosteus oculatus ENSLOCG00000014684 I
ENSLACG00000001387 Latimeria chalumnae ENSLACG00000001387 I
ENSGMOG00000002734 Gadus morhua ENSGMOG00000002734 I