POPTR_0017s08230 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0017s08230 T332139_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0017s08230.1 Sox 87 154

Links

Other Sox family TFs
Other Populus trichocarpa TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
chr5.CM0260.560.nd Lotus japonicus chr5.CM0260.560.nd N 0.635
PDK_20s1400562g001 Phoenix dactylifera PDK_20s1400562g001 N 0.621
MLOC_42821 Hordeum vulgare MLOC_42821 I 0.594
Traes_6BS_165C5AFD9 Triticum aestivum Traes_6BS_165C5AFD9 N 0.594
PDK_20s1331851g001 Phoenix dactylifera PDK_20s1331851g001 N 0.585
F775_20402 Aegilops tauschii F775_20402 N 0.561
Traes_6DS_C7F653F0F Triticum aestivum Traes_6DS_C7F653F0F N 0.561
Eucgr.F01991 Eucalyptus grandis Eucgr.F01991 N 0.540
PGSC0003DMG402018896 Solanum tuberosum PGSC0003DMG402018896 N 0.534
GLYMA10G44031 Glycine max GLYMA10G44031 N 0.451
SNAPOd2T00000370001 Oikopleura dioica SNAPOd2T00000370001 N 0.415