Thaps22372 (Thalassiosira pseudonana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Thaps22372 T332915_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thaps22372 Sox 84 114
Thaps22372 Sox 110 170

Links

Other Sox family TFs
Other Thalassiosira pseudonana TFs

17 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AC233853.1_FG002 Zea mays AC233853.1_FG002 N
BZIP34 Arabidopsis thaliana AT2G42380 N
BZIP61 Arabidopsis thaliana AT3G58120 N
BGIOSGA007886 Oryza indica BGIOSGA007886 N
Bo4g015960 Brassica oleracea Bo4g015960 N
Bo6g074510 Brassica oleracea Bo6g074510 N
Bo8g092430 Brassica oleracea Bo8g092430 N
Bra000256 Brassica rapa Bra000256 N
Bra003320 Brassica rapa Bra003320 N
Bra004689 Brassica rapa Bra004689 N
Bra007380 Brassica rapa Bra007380 N
BRADI2G06790 Brachypodium distachyon BRADI2G06790 N
ATBZIP34 Arabidopsis lyrata fgenesh2_kg.4__2390__AT2G42380.2 N
ATBZIP61 Arabidopsis lyrata fgenesh2_kg.5__2254__AT3G58120.1 N
GLYMA06G43760 Glycine max GLYMA06G43760 N
GLYMA12G14130 Glycine max GLYMA12G14130 N
GLYMA12G33600 Glycine max GLYMA12G33600 N
GLYMA13G34770 Glycine max GLYMA13G34770 N
GLYMA13G36870 Glycine max GLYMA13G36870 N
GSMUA_Achr4G10560_001 Musa acuminata GSMUA_Achr4G10560_001 N
GSMUA_Achr6G26930_001 Musa acuminata GSMUA_Achr6G26930_001 N
GSMUA_Achr9G06540_001 Musa acuminata GSMUA_Achr9G06540_001 N
LPERR01G06720 Leersia perrieri LPERR01G06720 N
MLOC_72368 Hordeum vulgare MLOC_72368 N
MTR_2g090900 Medicago truncatula MTR_2g090900 N
MTR_4g079500 Medicago truncatula MTR_4g079500 N
OB01G17130 Oryza brachyantha OB01G17130 N
OBART01G07120 Oryza barthii OBART01G07120 N
OBART02G10550 Oryza barthii OBART02G10550 N
OGLUM01G08020 Oryza glumaepatula OGLUM01G08020 N
OGLUM02G10470 Oryza glumaepatula OGLUM02G10470 N
OLONG_003093 Oryza longistaminata OLONG_003093 N
OMERI02G11410 Oryza meridionalis OMERI02G11410 N
ONIVA01G09160 Oryza nivara ONIVA01G09160 N
ONIVA02G11660 Oryza nivara ONIVA02G11660 N
OPUNC01G06850 Oryza punctata OPUNC01G06850 N
OPUNC01G30390 Oryza punctata OPUNC01G30390 N
OPUNC02G09400 Oryza punctata OPUNC02G09400 N
ORGLA02G0094900 Oryza glaberrima ORGLA02G0094900 N
ORUFI01G07680 Oryza rufipogon ORUFI01G07680 N
ORUFI02G10470 Oryza rufipogon ORUFI02G10470 N
BZIP02 Oryza sativa OS01G0211800 N
PGSC0003DMG400009388 Solanum tuberosum PGSC0003DMG400009388 N
PGSC0003DMG401007810 Solanum tuberosum PGSC0003DMG401007810 N
POPTR_0013s12810 Populus trichocarpa POPTR_0013s12810 N
PRUPE_ppa016271mg Prunus persica PRUPE_ppa016271mg N
PRUPE_ppa022385mg Prunus persica PRUPE_ppa022385mg N
Sb03g002050 Sorghum bicolor Sb03g002050 N
Solyc07g053450.2 Solanum lycopersicum Solyc07g053450.2 N
Solyc07g062710.2 Solanum lycopersicum Solyc07g062710.2 N
Solyc12g010800.1 Solanum lycopersicum Solyc12g010800.1 N
TCM_003607 Theobroma cacao TCM_003607 N
TCM_031686 Theobroma cacao TCM_031686 N
Traes_2BS_C9A338257 Triticum aestivum Traes_2BS_C9A338257 N
VIT_12s0028g02590 Vitis vinifera VIT_12s0028g02590 N
Ca_02472 Cicer arietinum Ca_02472 N
Ca_11292 Cicer arietinum Ca_11292 N
Cla015875 Citrullus lanatus Cla015875 N
Pm014253 Prunus mume Pm014253 N
29646.m001108 Ricinus communis 29646.m001108 N
cassava15850.m1 Manihot esculenta cassava15850.m1 N
Cucsa.122790 Cucumis sativus Cucsa.122790 N
Cucsa.148840 Cucumis sativus Cucsa.148840 N
Cucsa.309420 Cucumis sativus Cucsa.309420 N
estExt_fgenesh1_pg.C_160081 Physcomitrella patens estExt_fgenesh1_pg.C_160081 N
estExt_fgenesh1_pg.C_220219 Physcomitrella patens estExt_fgenesh1_pg.C_220219 N
mgf003967m Mimulus guttatus mgf003967m N
Aquca_005_00119 Aquilegia coerulea Aquca_005_00119 N
Aquca_051_00100 Aquilegia coerulea Aquca_051_00100 N
Bostr.18722s0001 Boechera stricta Bostr.18722s0001 N
Bostr.20903s0063 Boechera stricta Bostr.20903s0063 N
Cagra.0686s0029 Capsella grandiflora Cagra.0686s0029 N
Cagra.2636s0024 Capsella grandiflora Cagra.2636s0024 N
Carubv10017617m.g Capsella rubella Carubv10017617m.g N
Carubv10023644m.g Capsella rubella Carubv10023644m.g N
Ciclev10008720m.g Citrus clementina Ciclev10008720m.g N
Ciclev10015966m.g Citrus clementina Ciclev10015966m.g N
Eucgr.K01085 Eucalyptus grandis Eucgr.K01085 N
evm.TU.supercontig_209.8 Carica papaya evm.TU.supercontig_209.8 N
gene17796-v1.0-hybrid Fragaria vesca gene17796-v1.0-hybrid N
gene27194-v1.0-hybrid Fragaria vesca gene27194-v1.0-hybrid N
Gorai.002G064900 Gossypium raimondii Gorai.002G064900 N
Gorai.013G172500 Gossypium raimondii Gorai.013G172500 N
Lus10002185.g Linum usitatissimum Lus10002185.g N
Lus10017656.g Linum usitatissimum Lus10017656.g N
Lus10033630.g Linum usitatissimum Lus10033630.g N
MDP0000133698 Malus domestica MDP0000133698 N
MDP0000555457 Malus domestica MDP0000555457 N
orange1.1g037696m.g Citrus sinensis orange1.1g037696m.g N
Pavir.Eb03400 Panicum virgatum Pavir.Eb03400 N
Pavir.J05339 Panicum virgatum Pavir.J05339 N
Pavir.J11397 Panicum virgatum Pavir.J11397 N
SapurV1A.0083s0430 Salix purpurea SapurV1A.0083s0430 N
SapurV1A.0474s0270 Salix purpurea SapurV1A.0474s0270 N
SapurV1A.0500s0200 Salix purpurea SapurV1A.0500s0200 N
SapurV1A.1835s0070 Salix purpurea SapurV1A.1835s0070 N
SapurV1A.1977s0020 Salix purpurea SapurV1A.1977s0020 N
Thhalv10006090m.g Eutrema salsugineum Thhalv10006090m.g N
Thhalv10016923m.g Eutrema salsugineum Thhalv10016923m.g N
PK16223.1 Cannabis sativa PK16223.1 N
PK21227.1 Cannabis sativa PK21227.1 N
chr3.CM0160.1080.nc Lotus japonicus chr3.CM0160.1080.nc N