Cagra.1261s0010 (Capsella grandiflora)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cagra.1261s0010 T334404_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.741 1.000
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.707 0.932
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.707 0.932
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.660 0.705
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.660 0.705
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.596 0.750
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1261s0010.1.p Sox 154 197
Cagra.1261s0010.2.p Sox 87 131

Links

Other Sox family TFs
Other Capsella grandiflora TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TBX20 Homo sapiens ENSG00000164532 D 0.000
TBX1 Homo sapiens ENSG00000184058 D 0.000
Tbx1 Mus musculus ENSMUSG00000009097 D 0.000
Tbx20 Mus musculus ENSMUSG00000031965 D 0.000
org-1 Drosophila melanogaster FBgn0021767 D 0.000
CpipJ_CPIJ007784 Culex pipiens CpipJ_CPIJ007784 I 0.000
AAEL018165 Aedes aegypti AAEL018165 I 0.000
ACYPI001903 Acyrthosiphon pisum ACYPI001903 I 0.000
BGIBMGA013132 Bombyx mori BGIBMGA013132 I 0.000
CapteG226618 Capitella teleta CapteG226618 I 0.000
CGI_10008753 Crassostrea gigas CGI_10008753 I 0.000
CPIJ007784 Culex quinquefasciatus CPIJ007784 I 0.000
DAPPUDRAFT_3881 Daphnia pulex DAPPUDRAFT_3881 I 0.000
TBX20 Anolis carolinensis ENSACAG00000007473 I 0.000
ENSACAG00000008549 Anolis carolinensis ENSACAG00000008549 I 0.000
ENSAMEG00000001098 Ailuropoda melanoleuca ENSAMEG00000001098 I 0.000
ENSAMXG00000002328 Astyanax mexicanus ENSAMXG00000002328 I 0.000
ENSAMXG00000020444 Astyanax mexicanus ENSAMXG00000020444 I 0.000
TBX20 Bos taurus ENSBTAG00000017541 I 0.000
TBX10 Canis familiaris ENSCAFG00000011264 I 0.000
TBX20 Canis familiaris ENSCAFG00000028536 I 0.000
TBX20 Callithrix jacchus ENSCJAG00000012232 I 0.000
TBX1 Callithrix jacchus ENSCJAG00000014591 I 0.000
TBX20 Cavia porcellus ENSCPOG00000015229 I 0.000
ENSCSAG00000008726 Chlorocebus sabaeus ENSCSAG00000008726 I 0.000
ENSCSAG00000011818 Chlorocebus sabaeus ENSCSAG00000011818 I 0.000
ENSCSAG00000014936 Chlorocebus sabaeus ENSCSAG00000014936 I 0.000
ENSCSAVG00000000786 Ciona savignyi ENSCSAVG00000000786 I 0.000
tbx20 Danio rerio ENSDARG00000005150 I 0.000
tbx1 Danio rerio ENSDARG00000031891 I 0.000
TBX20 Dasypus novemcinctus ENSDNOG00000004142 I 0.000
TBX1 Dasypus novemcinctus ENSDNOG00000035422 I 0.000
Tbx10 Dipodomys ordii ENSDORG00000010070 I 0.000
TBX20 Equus caballus ENSECAG00000018182 I 0.000
TBX20 Erinaceus europaeus ENSEEUG00000010135 I 0.000
TBX20 Echinops telfairi ENSETEG00000012771 I 0.000
ENSFALG00000002727 Ficedula albicollis ENSFALG00000002727 I 0.000
ENSFALG00000008041 Ficedula albicollis ENSFALG00000008041 I 0.000
TBX10 Felis catus ENSFCAG00000001760 I 0.000
ENSFCAG00000005446 Felis catus ENSFCAG00000005446 I 0.000
TBX20 Felis catus ENSFCAG00000013004 I 0.000
TBX10 Homo sapiens ENSG00000167800 I 0.000
tbx20 Gasterosteus aculeatus ENSGACG00000012706 I 0.000
tbx1 Gasterosteus aculeatus ENSGACG00000013057 I 0.000
ENSGALG00000003599 Gallus gallus ENSGALG00000003599 I 0.000
ENSGALG00000012151 Gallus gallus ENSGALG00000012151 I 0.000
ENSGGOG00000009181 Gorilla gorilla ENSGGOG00000009181 I 0.000
TBX10 Gorilla gorilla ENSGGOG00000011961 I 0.000
TBX20 Gorilla gorilla ENSGGOG00000026618 I 0.000
ENSGMOG00000012734 Gadus morhua ENSGMOG00000012734 I 0.000
ENSGMOG00000018613 Gadus morhua ENSGMOG00000018613 I 0.000
ENSLACG00000004994 Latimeria chalumnae ENSLACG00000004994 I 0.000
ENSLACG00000010741 Latimeria chalumnae ENSLACG00000010741 I 0.000
ENSLACG00000016333 Latimeria chalumnae ENSLACG00000016333 I 0.000
TBX20 Loxodonta africana ENSLAFG00000012790 I 0.000
TBX1 Loxodonta africana ENSLAFG00000021555 I 0.000
ENSLOCG00000002483 Lepisosteus oculatus ENSLOCG00000002483 I 0.000
ENSMEUG00000007568 Macropus eugenii ENSMEUG00000007568 I 0.000
ENSMEUG00000011624 Macropus eugenii ENSMEUG00000011624 I 0.000
ENSMGAG00000004357 Meleagris gallopavo ENSMGAG00000004357 I 0.000
TBX20 Meleagris gallopavo ENSMGAG00000012040 I 0.000
TBX20 Myotis lucifugus ENSMLUG00000015517 I 0.000
TBX20 Macaca mulatta ENSMMUG00000012549 I 0.000
ENSMMUG00000018529 Macaca mulatta ENSMMUG00000018529 I 0.000
TBX20 Monodelphis domestica ENSMODG00000000085 I 0.000
TBX1 Monodelphis domestica ENSMODG00000021176 I 0.000
TBX10 Monodelphis domestica ENSMODG00000021334 I 0.000
ENSMPUG00000003900 Mustela putorius furo ENSMPUG00000003900 I 0.000
ENSMPUG00000004076 Mustela putorius furo ENSMPUG00000004076 I 0.000
ENSMPUG00000007865 Mustela putorius furo ENSMPUG00000007865 I 0.000
Tbx10 Mus musculus ENSMUSG00000037477 I 0.000
ENSNLEG00000001606 Nomascus leucogenys ENSNLEG00000001606 I 0.000
ENSOANG00000006968 Ornithorhynchus anatinus ENSOANG00000006968 I 0.000
ENSOARG00000005153 Ovis aries ENSOARG00000005153 I 0.000
TBX20 Oryctolagus cuniculus ENSOCUG00000007422 I 0.000
TBX10 Otolemur garnettii ENSOGAG00000000784 I 0.000
TBX1 Otolemur garnettii ENSOGAG00000003596 I 0.000
TBX20 Otolemur garnettii ENSOGAG00000010338 I 0.000
ENSONIG00000006593 Oreochromis niloticus ENSONIG00000006593 I 0.000
ENSONIG00000015827 Oreochromis niloticus ENSONIG00000015827 I 0.000
TBX20 Ochotona princeps ENSOPRG00000013626 I 0.000
tbx1 Oryzias latipes ENSORLG00000015256 I 0.000
ENSPANG00000006501 Papio anubis ENSPANG00000006501 I 0.000
ENSPANG00000007074 Papio anubis ENSPANG00000007074 I 0.000
ENSPANG00000015763 Papio anubis ENSPANG00000015763 I 0.000
TBX10 Procavia capensis ENSPCAG00000009585 I 0.000
ENSPFOG00000009540 Poecilia formosa ENSPFOG00000009540 I 0.000
ENSPFOG00000009621 Poecilia formosa ENSPFOG00000009621 I 0.000
ENSPFOG00000012859 Poecilia formosa ENSPFOG00000012859 I 0.000
ENSPPYG00000017641 Pongo abelii ENSPPYG00000017641 I 0.000
ENSPSIG00000016149 Pelodiscus sinensis ENSPSIG00000016149 I 0.000
TBX10 Pan troglodytes ENSPTRG00000003972 I 0.000
TBX20 Pan troglodytes ENSPTRG00000019076 I 0.000
TBX10 Pteropus vampyrus ENSPVAG00000008592 I 0.000
Tbx1 Rattus norvegicus ENSRNOG00000001892 I 0.000
Tbx20 Rattus norvegicus ENSRNOG00000016181 I 0.000
Tbx10 Rattus norvegicus ENSRNOG00000017944 I 0.000
ENSSHAG00000016356 Sarcophilus harrisii ENSSHAG00000016356 I 0.000
TBX20 Sus scrofa ENSSSCG00000016662 I 0.000
ENSSTOG00000004505 Ictidomys tridecemlineatus ENSSTOG00000004505 I 0.000
ENSSTOG00000011629 Ictidomys tridecemlineatus ENSSTOG00000011629 I 0.000
TBX20 Taeniopygia guttata ENSTGUG00000005375 I 0.000
ENSTGUG00000007382 Taeniopygia guttata ENSTGUG00000007382 I 0.000
TBX1 Taeniopygia guttata ENSTGUG00000008395 I 0.000
tbx20 Tetraodon nigroviridis ENSTNIG00000005154 I 0.000
tbx1 Tetraodon nigroviridis ENSTNIG00000016767 I 0.000
tbx20 Takifugu rubripes ENSTRUG00000005667 I 0.000
tbx1 Takifugu rubripes ENSTRUG00000014017 I 0.000
TBX20 Tursiops truncatus ENSTTRG00000016622 I 0.000
ENSXMAG00000004704 Xiphophorus maculatus ENSXMAG00000004704 I 0.000
GA10837 Drosophila pseudoobscura FBgn0070893 I 0.000
GF22584 Drosophila ananassae FBgn0099578 I 0.000
GG19051 Drosophila erecta FBgn0111257 I 0.000
GH12234 Drosophila grimshawi FBgn0119713 I 0.000
GI15769 Drosophila mojavensis FBgn0138518 I 0.000
GL20248 Drosophila persimilis FBgn0157843 I 0.000
GM21356 Drosophila sechellia FBgn0176237 I 0.000
GJ18625 Drosophila virilis FBgn0205781 I 0.000
GK19893 Drosophila willistoni FBgn0221891 I 0.000
GE17455 Drosophila yakuba FBgn0234921 I 0.000
GB55445 Apis mellifera GB55445 I 0.000
HMEL015536 Heliconius melpomene HMEL015536 I 0.000
KGM_08622 Danaus plexippus KGM_08622 I 0.000
L798_01101 Zootermopsis nevadensis L798_01101 I 0.000
LotgiG104372 Lottia gigantea LotgiG104372 I 0.000
NEMVEDRAFT_v1g214571 Nematostella vectensis NEMVEDRAFT_v1g214571 I 0.000
NV11904 Nasonia vitripennis NV11904 I 0.000
PHUM607490 Pediculus humanus PHUM607490 I 0.000
SMAR009230 Strigamia maritima SMAR009230 I 0.000
TC015327 Tribolium castaneum TC015327 I 0.000
tetur04g00890 Tetranychus urticae tetur04g00890 I 0.000
YQE_10853 Dendroctonus ponderosae YQE_10853 I 0.000
Aan_R010744 Calypte anna Aan_R010744 I 0.000
Cflo_09868--XP_624689.2_APIME Camponotus floridanus Cflo_09868--XP_624689.2_APIME I 0.000
Cmyd_10006683 Chelonia mydas Cmyd_10006683 I 0.000
ENSBTAP00000015683-D1 Bos grunniens ENSBTAP00000015683-D1 I 0.000
ENSP00000331791-D2 Bos grunniens ENSP00000331791-D2 I 0.000
ENSP00000335191 Macaca fascicularis ENSP00000335191 I 0.000
ENSP00000386170-D1 Bos grunniens ENSP00000386170-D1 I 0.000
ENSP00000386170 Macaca fascicularis ENSP00000386170 I 0.000
Hsal_04471--XP_624689.2_APIME Harpegnathos saltator Hsal_04471--XP_624689.2_APIME I 0.000
Myotis_brandtii_Tbx10_10030825 Myotis brandtii Myotis_brandtii_Tbx10_10030825 I 0.000
Myotis_brandtii_Tbx20_10020109 Myotis brandtii Myotis_brandtii_Tbx20_10020109 I 0.000
Ogr08509 Ophisaurus gracilis Ogr08509 I 0.000
Ogr18070 Ophisaurus gracilis Ogr18070 I 0.000
Pvit_04171 Pogona vitticeps Pvit_04171 I 0.000
Pvit_15846 Pogona vitticeps Pvit_15846 I 0.000
Pvit_16222 Pogona vitticeps Pvit_16222 I 0.000
fgenesh2_kg.scaffold_118000001 Branchiostoma floridae fgenesh2_kg.scaffold_118000001 I 0.000
Sakowv30001714m.g Saccoglossus kowalevskii Sakowv30001714m.g I 0.000
Sakowv30029504m.g Saccoglossus kowalevskii Sakowv30029504m.g I 0.000
CLEC006885 Cimex lectularius CLEC006885 I 0.000
LDEC008541 Leptinotarsa decemlineata LDEC008541 I 0.000
tbx1 Xenopus tropicalis XB-GENE-478084 I 0.000
tbx1.L Xenopus laevis XB-GENE-478088 I 0.000
tbx20 Xenopus tropicalis XB-GENE-487334 I 0.000
tbx1.S Xenopus laevis XB-GENE-6254396 I 0.000
tbx20.L Xenopus laevis XB-GENE-865696 I 0.000
AALB002686 Anopheles albimanus AALB002686 I 0.000
AARA001806 Anopheles arabiensis AARA001806 I 0.000
AATE015045 Anopheles atroparvus AATE015045 I 0.000
ACUA026816 Anopheles culicifacies ACUA026816 I 0.000
ADIR010556 Anopheles dirus ADIR010556 I 0.000
AEPI001144 Anopheles epiroticus AEPI001144 I 0.000
AFAF008331 Anopheles farauti AFAF008331 I 0.000
AFUN001113 Anopheles funestus AFUN001113 I 0.000
AMAM012836 Anopheles maculatus AMAM012836 I 0.000
AMEC007874 Anopheles melas AMEC007874 I 0.000
AMEM018425 Anopheles merus AMEM018425 I 0.000
AMIN000536 Anopheles minimus AMIN000536 I 0.000
AQUA006531 Anopheles quadriannulatus AQUA006531 I 0.000
ASIS010497 Anopheles sinensis ASIS010497 I 0.000
LLOJ005386 Lutzomyia longipalpis LLOJ005386 I 0.000
WBGene00244664 Onchocerca volvulus WBGene00244664 N 0.000
ALUE_0000283301 Ascaris lumbricoides ALUE_0000283301 N 0.000
ASU_06082 Ascaris suum ASU_06082 N 0.000
DME_0000045201 Dracunculus medinensis DME_0000045201 N 0.000
L596_g22450 Steinernema carpocapsae L596_g22450 N 0.000
L892_g7838 Steinernema scapterisci L892_g7838 N 0.000
nDi.2.2.2.g09215 Dirofilaria immitis nDi.2.2.2.g09215 N 0.000
scaffold221-EXSNAP2012.37 Pristionchus exspectatus scaffold221-EXSNAP2012.37 N 0.000
TCLT_0000448101 Thelazia callipaeda TCLT_0000448101 N 0.000