Ciclev10022170m.g (Citrus clementina)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ciclev10022170m.g T334442_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YAB1
M00890_2.00 		Arabidopsis thaliana
AATAATWA
TWATTATT		 PBM
Franco-Zorrilla et al.(2014)
YAB1 		0.712 0.977
CRC
M07266_2.00 		Arabidopsis thaliana
TWATCATW
WATGATWA		 Dap-seq
OMalley et al.(2016)
CRC_col_a 		0.689 0.727
CRC
M07267_2.00 		Arabidopsis thaliana
GGTTAGTGTTTTGGAGTCGAATATGACTTG
CAAGTCATATTCGACTCCAAAACACTAACC		 Dap-seq
OMalley et al.(2016)
CRC_colamp_a 		0.689 0.727
YAB5
M02486_2.00 		Arabidopsis thaliana
NNNNHRN
NYDNNNN		 PBM
Weirauch et al.(2014)
pTH7575 		0.678 0.909
YAB5
M00889_2.00 		Arabidopsis thaliana
NATRATTADNNN
NNNHTAATYATN		 PBM
Franco-Zorrilla et al.(2014)
YAB5 		0.678 0.909
INO
M02485_2.00 		Arabidopsis thaliana
NHNNNYRNNN
NNNYRNNNDN		 PBM
Weirauch et al.(2014)
pTH7516 		0.567 0.727
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10022170m Sox 131 174

Links

Other Sox family TFs
Other Citrus clementina TFs

529 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACUA025632 Anopheles culicifacies ACUA025632 N 0.000
LLOJ004028 Lutzomyia longipalpis LLOJ004028 N 0.000
ASTEI10740 Anopheles stephensi ASTEI10740 N 0.000
ASIS018375 Anopheles sinensis ASIS018375 N 0.000
AQUA001810 Anopheles quadriannulatus AQUA001810 N 0.000
AMIN002364 Anopheles minimus AMIN002364 N 0.000
AMEM003228 Anopheles merus AMEM003228 N 0.000
AMEC012325 Anopheles melas AMEC012325 N 0.000
AMAM022417 Anopheles maculatus AMAM022417 N 0.000
AFUN001272 Anopheles funestus AFUN001272 N 0.000
AFAF001135 Anopheles farauti AFAF001135 N 0.000
AEPI009418 Anopheles epiroticus AEPI009418 N 0.000
ADIR010123 Anopheles dirus ADIR010123 N 0.000
MDOA008474 Musca domestica MDOA008474 N 0.000
ACOM033657 Anopheles coluzzii ACOM033657 N 0.000
ACHR006211 Anopheles christyi ACHR006211 N 0.000
AATE004647 Anopheles atroparvus AATE004647 N 0.000
AARA006496 Anopheles arabiensis AARA006496 N 0.000
AALB009551 Anopheles albimanus AALB009551 N 0.000
Minc06622 Meloidogyne incognita Minc06622 N 0.000
LDEC007066 Leptinotarsa decemlineata LDEC007066 N 0.000
LCUP007789 Lucilia cuprina LCUP007789 N 0.000
CLEC008450 Cimex lectularius CLEC008450 N 0.000
Hsal_06265--XP_624018.2_APIME Harpegnathos saltator Hsal_06265--XP_624018.2_APIME N 0.000
Hsal_02676--XP_625055.2_APIME Harpegnathos saltator Hsal_02676--XP_625055.2_APIME N 0.000
MhA1_Contig232.frz3.gene23 Meloidogyne hapla MhA1_Contig232.frz3.gene23 N 0.000
TELCIR_16246 Teladorsagia circumcincta TELCIR_16246 N 0.000
SVUK_0000363901 Strongylus vulgaris SVUK_0000363901 N 0.000
SVE_0827400 Strongyloides venezuelensis SVE_0827400 N 0.000
SSTP_0001127200 Strongyloides stercoralis SSTP_0001127200 N 0.000
SSTP_0000878000 Strongyloides stercoralis SSTP_0000878000 N 0.000
SPAL_0001274100 Strongyloides papillosus SPAL_0001274100 N 0.000
scaffold517-EXSNAP2012.7 Pristionchus exspectatus scaffold517-EXSNAP2012.7 N 0.000
RSKR_0000620800 Rhabditophanes kr3021 RSKR_0000620800 N 0.000
RSKR_0000607700 Rhabditophanes kr3021 RSKR_0000607700 N 0.000
PTRK_0001310900 Parastrongyloides trichosuri PTRK_0001310900 N 0.000
OESDEN_01314 Oesophagostomum dentatum OESDEN_01314 N 0.000
NECAME_01599 Necator americanus NECAME_01599 N 0.000
ENSMMUP00000034886 Macaca fascicularis ENSMMUP00000034886 N 0.000
L898_g14011 Steinernema monticolum L898_g14011 N 0.000
L889_g13125 Steinernema feltiae L889_g13125 N 0.000
HCOI01215700 Haemonchus contortus HCOI01215700 N 0.000
HCOI00076900 Haemonchus contortus HCOI00076900 N 0.000
DICVIV_00270 Dictyocaulus viviparus DICVIV_00270 N 0.000
ANCDUO_06783 Ancylostoma duodenale ANCDUO_06783 N 0.000
ANCCEY_15918 Ancylostoma ceylanicum ANCCEY_15918 N 0.000
ANCCEY_15064 Ancylostoma ceylanicum ANCCEY_15064 N 0.000
ANCCAN_09463 Ancylostoma caninum ANCCAN_09463 N 0.000
ACAC_0000973801 Angiostrongylus cantonensis ACAC_0000973801 N 0.000
PPAI002532 Phlebotomus papatasi PPAI002532 N 0.000
CJA30740 Caenorhabditis japonica CJA30740 N 0.000
GA10956 Drosophila pseudoobscura FBgn0071012 N 0.000
polybromo Drosophila melanogaster FBgn0039227 N 0.000
tox2 Takifugu rubripes ENSTRUG00000013848 N 0.000
ENSTGUG00000014902 Taeniopygia guttata ENSTGUG00000014902 N 0.000
ENSTGUG00000003811 Taeniopygia guttata ENSTGUG00000003811 N 0.000
ENSSSCG00000023554 Sus scrofa ENSSSCG00000023554 N 0.000
TOX2 Sorex araneus ENSSARG00000001080 N 0.000
ENSGMOG00000013406 Gadus morhua ENSGMOG00000013406 N 0.000
ENSGMOG00000008081 Gadus morhua ENSGMOG00000008081 N 0.000
ENSAMXG00000020941 Astyanax mexicanus ENSAMXG00000020941 N 0.000
DAPPUDRAFT_304382 Daphnia pulex DAPPUDRAFT_304382 N 0.000
CRE14258 Caenorhabditis remanei CRE14258 N 0.000
GF23180 Drosophila ananassae FBgn0100174 N 0.000
CJA03316 Caenorhabditis japonica CJA03316 N 0.000
CGI_10018256 Crassostrea gigas CGI_10018256 N 0.000
CBN31697 Caenorhabditis brenneri CBN31697 N 0.000
CBN07735 Caenorhabditis brenneri CBN07735 N 0.000
CBG11867 Caenorhabditis briggsae CBG11867 N 0.000
BGIBMGA010711 Bombyx mori BGIBMGA010711 N 0.000
AGAP001099 Anopheles gambiae AGAP001099 N 0.000
ADAC005840 Anopheles darlingi ADAC005840 N 0.000
ACYPI001480 Acyrthosiphon pisum ACYPI001480 N 0.000
ACEP25803 Atta cephalotes ACEP25803 N 0.000
AAEL000181 Aedes aegypti AAEL000181 N 0.000
KGM_06850 Danaus plexippus KGM_06850 N 0.000
Cflo_01038--XP_625055.2_APIME Camponotus floridanus Cflo_01038--XP_625055.2_APIME N 0.000
YQE_05481 Dendroctonus ponderosae YQE_05481 N 0.000
pbrm-1 Caenorhabditis elegans WBGene00007042 N 0.000
tetur21g01330 Tetranychus urticae tetur21g01330 N 0.000
TC000618 Tribolium castaneum TC000618 N 0.000
SMAR009325 Strigamia maritima SMAR009325 N 0.000
SINV16486 Solenopsis invicta SINV16486 N 0.000
RPRC014309 Rhodnius prolixus RPRC014309 N 0.000
PHUM244090 Pediculus humanus PHUM244090 N 0.000
MESCA007902 Megaselia scalaris MESCA007902 N 0.000
LotgiG176647 Lottia gigantea LotgiG176647 N 0.000
L798_12146 Zootermopsis nevadensis L798_12146 N 0.000
CpipJ_CPIJ007271 Culex pipiens CpipJ_CPIJ007271 N 0.000
ISCW005293 Ixodes scapularis ISCW005293 N 0.000
HMEL006186 Heliconius melpomene HMEL006186 N 0.000
GB42921 Apis mellifera GB42921 N 0.000
GE10775 Drosophila yakuba FBgn0228617 N 0.000
GK13168 Drosophila willistoni FBgn0215177 N 0.000
GJ23670 Drosophila virilis FBgn0210767 N 0.000
GM22062 Drosophila sechellia FBgn0176933 N 0.000
GL13862 Drosophila persimilis FBgn0151467 N 0.000
GI24041 Drosophila mojavensis FBgn0146764 N 0.000
GH18462 Drosophila grimshawi FBgn0125929 N 0.000
GG12321 Drosophila erecta FBgn0104611 N 0.000