Ciclev10023918m.g (Citrus clementina)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ciclev10023918m.g T334443_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.445 0.678
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.445 0.678
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10023918m Sox 173 240
Ciclev10023918m Sox 289 355
Ciclev10023918m Sox 395 463

Links

Other Sox family TFs
Other Citrus clementina TFs

43 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PRDM6 Homo sapiens ENSG00000061455 D
PRDM6 Sus scrofa ENSSSCG00000014238 I
PRDM6 Oryctolagus cuniculus ENSOCUG00000003454 I
ENSONIG00000013818 Oreochromis niloticus ENSONIG00000013818 I
PRDM6 Ochotona princeps ENSOPRG00000004020 I
ENSORLG00000017089 Oryzias latipes ENSORLG00000017089 I
ENSPANG00000020936 Papio anubis ENSPANG00000020936 I
ENSPFOG00000000918 Poecilia formosa ENSPFOG00000000918 I
ENSPSIG00000007714 Pelodiscus sinensis ENSPSIG00000007714 I
PRDM6 Pan troglodytes ENSPTRG00000017180 I
PRDM6 Pteropus vampyrus ENSPVAG00000006781 I
Prdm6 Rattus norvegicus ENSRNOG00000030486 I
ENSSHAG00000009542 Sarcophilus harrisii ENSSHAG00000009542 I
ENSNLEG00000012064 Nomascus leucogenys ENSNLEG00000012064 I
PRDM6 Tupaia belangeri ENSTBEG00000010088 I
ENSTNIG00000004450 Tetraodon nigroviridis ENSTNIG00000004450 I
PRDM6 Takifugu rubripes ENSTRUG00000011582 I
ENSTSYG00000009407 Tarsius syrichta ENSTSYG00000009407 I
PRDM6 Tursiops truncatus ENSTTRG00000006808 I
Alligator_sinensis_CCG004791.1 Alligator sinensis Alligator_sinensis_CCG004791.1 I
ENSBTAP00000027421-D1 Bos grunniens ENSBTAP00000027421-D1 I
ENSP00000261364 Macaca fascicularis ENSP00000261364 I
Myotis_brandtii_PRDM6_10015768 Myotis brandtii Myotis_brandtii_PRDM6_10015768 I
Ogr18847 Ophisaurus gracilis Ogr18847 I
Pvit_11059 Pogona vitticeps Pvit_11059 I
prdm6 Xenopus tropicalis XB-GENE-854907 I
PRDM6 Felis catus ENSFCAG00000026249 I
ENSAMEG00000015711 Ailuropoda melanoleuca ENSAMEG00000015711 I
ENSAMXG00000012588 Astyanax mexicanus ENSAMXG00000012588 I
PRDM6 Bos taurus ENSBTAG00000020578 I
PRDM6 Canis familiaris ENSCAFG00000023666 I
PRDM6 Choloepus hoffmanni ENSCHOG00000003085 I
PRDM6 Callithrix jacchus ENSCJAG00000017318 I
ENSCPOG00000004258 Cavia porcellus ENSCPOG00000004258 I
ENSCSAG00000014599 Chlorocebus sabaeus ENSCSAG00000014599 I
PRDM6 Dasypus novemcinctus ENSDNOG00000006337 I
PRDM6 Equus caballus ENSECAG00000004532 I
PRDM6 Erinaceus europaeus ENSEEUG00000005543 I
ENSFALG00000007522 Ficedula albicollis ENSFALG00000007522 I
ENSOANG00000001527 Ornithorhynchus anatinus ENSOANG00000001527 I
PRDM6 Gallus gallus ENSGALG00000005351 I
PRDM6 Loxodonta africana ENSLAFG00000000396 I
ENSLOCG00000008663 Lepisosteus oculatus ENSLOCG00000008663 I
ENSMEUG00000011470 Macropus eugenii ENSMEUG00000011470 I
ENSMICG00000007754 Microcebus murinus ENSMICG00000007754 I
PRDM6 Myotis lucifugus ENSMLUG00000010064 I
ENSMMUG00000010652 Macaca mulatta ENSMMUG00000010652 I
PRDM6 Monodelphis domestica ENSMODG00000013415 I
ENSMPUG00000012965 Mustela putorius furo ENSMPUG00000012965 I
Prdm6 Mus musculus ENSMUSG00000069378 I
PRDM6 Anolis carolinensis ENSACAG00000003401 I