CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
tbx-38
(
Caenorhabditis elegans
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
WBGene00006557
T340946_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
tbx-38
M00714_2.00
Caenorhabditis elegans
NDRGTGHKAN
NTMDCACYHN
PBM
Narasimhan et al.(2015)
pTH9462
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.734
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00714_2.00
T-box
12
195
VSLSTPEIWEEFYPKTEMIVTRNRGRVIFPHLDYIIKGLDPGSLYSIYIHLERVDGIKYKFDAGEWKEFAKGDPILPIQYKEHPRGKRTGAEWMSEPVSFAHIKITNNPEIKDQKVILVQSMHKHIPVVTVKQVRHYKTGYQEDFSGEQFRLEATEFMVVTAYQNEILKNLKVHHNKFASGFRS
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C24H11.3
T-box
12
195
VSLSTPEIWEEFYPKTEMIVTRNRGRVIFPHLDYIIKGLDPGSLYSIYIHLERVDGIKYKFDAGEWKEFAKGDPILPIQYKEHPRGKRTGAEWMSEPVSFAHIKITNNPEIKDQKVILVQSMHKHIPVVTVKQVRHYKTGYQEDFSGEQFRLEATEFMVVTAYQNEILKNLKVHHNKFASGFRS
Links
Other
T-box
family TFs
Other
Caenorhabditis elegans
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AAEL008696
Aedes aegypti
AAEL008696
N
Smox
Drosophila melanogaster
FBgn0025800
N
GA15332
Drosophila pseudoobscura
FBgn0075352
N
GF20979
Drosophila ananassae
FBgn0097984
N
GG17985
Drosophila erecta
FBgn0110203
N
GH24864
Drosophila grimshawi
FBgn0132319
N
GI14415
Drosophila mojavensis
FBgn0137167
N
GL20193
Drosophila persimilis
FBgn0157788
N
GM11208
Drosophila sechellia
FBgn0166153
N
GD24642
Drosophila simulans
FBgn0195970
N
GK24988
Drosophila willistoni
FBgn0226947
N
GE17479
Drosophila yakuba
FBgn0234944
N
LCUP004671
Lucilia cuprina
LCUP004671
N
MDOA010892
Musca domestica
MDOA010892
N