CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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tbx-38
(
Caenorhabditis elegans
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
WBGene00006557
T340946_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
tbx-38
M00714_2.00
Caenorhabditis elegans
NDRGTGHKAN
NTMDCACYHN
PBM
Narasimhan et al.(2015)
pTH9462
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.734
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00714_2.00
T-box
12
195
VSLSTPEIWEEFYPKTEMIVTRNRGRVIFPHLDYIIKGLDPGSLYSIYIHLERVDGIKYKFDAGEWKEFAKGDPILPIQYKEHPRGKRTGAEWMSEPVSFAHIKITNNPEIKDQKVILVQSMHKHIPVVTVKQVRHYKTGYQEDFSGEQFRLEATEFMVVTAYQNEILKNLKVHHNKFASGFRS
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
C24H11.3
T-box
12
195
VSLSTPEIWEEFYPKTEMIVTRNRGRVIFPHLDYIIKGLDPGSLYSIYIHLERVDGIKYKFDAGEWKEFAKGDPILPIQYKEHPRGKRTGAEWMSEPVSFAHIKITNNPEIKDQKVILVQSMHKHIPVVTVKQVRHYKTGYQEDFSGEQFRLEATEFMVVTAYQNEILKNLKVHHNKFASGFRS
Links
Other
T-box
family TFs
Other
Caenorhabditis elegans
TFs
1 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
tbx-37
Caenorhabditis elegans
WBGene00006556
I
0.797