RSKR_0000042800 (Rhabditophanes kr3021)
T-box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00907 (T-box) IPR001699 RSKR_0000042800 T341900_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
estExt_fgenesh2_pg.C_1570024
M01030_2.00 		Branchiostoma floridae
NHNDCACNHN
NDNGTGHNDN		 PBM
SebePedros et al.(2013)
pTH9244 		0.794 0.663
XP_008203914.1
M01029_2.00 		Nasonia vitripennis
AGGTGTBA
TVACACCT		 PBM
SebePedros et al.(2013)
pTH9336 		0.792 0.713
Tbx3
M00834_2.00 		Mus musculus
NHNDCACNHN
NDNGTGHNDN		 PBM
Weirauch et al.(2013)
pTH3998 		0.785 0.773
TBX3
M05801_2.00 		Homo sapiens
NDSGTGTBRN
NYVACACSHN		 SELEX
Yin et al.(2017)
TBX3_eDBD_HT-SELEX 		0.785 0.773
TBX3
M09426_2.00 		Homo sapiens
DVDGGTGBNAR
YTNVCACCHBH		 Misc
Kulakovskiy et al.(2013)
TBX3_HUMAN.H11MO.0.C 		0.785 0.773
Tbx3
M09429_2.00 		Mus musculus
RRGGTGBBR
YVVCACCYY		 Misc
Kulakovskiy et al.(2013)
TBX3_MOUSE.H11MO.0.B 		0.785 0.773
TBX3
M05802_2.00 		Homo sapiens
DAGGTGTKAN
NTMACACCTH		 SELEX
Yin et al.(2017)
TBX3_eDBD_Methyl-HT-SELEX 		0.785 0.773
Tbx2
M00830_2.00 		Mus musculus
NYVDCACBHN
NDVGTGHBRN		 PBM
Weirauch et al.(2013)
pTH3751 		0.785 0.762
TBX2
M03556_2.00 		Homo sapiens
GGTGTKADDWNTVACACB
VGTGTBANWHHTMACACC		 SELEX
Jolma et al.(2013)
TBX2_1 		0.785 0.762
TBX2
M03557_2.00 		Homo sapiens
NAGGTGTBAWN
NWTVACACCTN		 SELEX
Jolma et al.(2013)
TBX2_2 		0.785 0.762
TBX2
M05799_2.00 		Homo sapiens
NNVRCRCNNN
NNNGYGYBNN		 SELEX
Yin et al.(2017)
TBX2_eDBD_HT-SELEX 		0.785 0.762
Tbx2
M08044_2.00 		Mus musculus
GCHYBCTGGGADHTGTAGTYH
DRACTACADHTCCCAGVRDGC		 ChIP-seq
Chen et al.(2011)
SRP001585_Tbx2 		0.785 0.762
TBX2
M11381_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX2_Q2 		0.785 0.762
TBX2
M11382_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBX2_Q5 		0.785 0.762
TBX2
M05800_2.00 		Homo sapiens
NNVRCRCBNN
NNVGYGYBNN		 SELEX
Yin et al.(2017)
TBX2_eDBD_Methyl-HT-SELEX 		0.785 0.762
TBX2
M02495_2.00 		Gasterosteus aculeatus
NNVDCACNHN
NDNGTGHBNN		 PBM
Weirauch et al.(2014)
pTH9182 		0.764 0.762
TBX2
M02496_2.00 		Takifugu rubripes
DAGGTGTBRN
NYVACACCTH		 PBM
Weirauch et al.(2014)
pTH9289 		0.764 0.757
For this family, TFs with SR scores > 0.734 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0000042800.2 T-box 71 251

Links

Other T-box family TFs
Other Rhabditophanes kr3021 TFs

189 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB3 Arabidopsis thaliana AT1G22640 D
ATMYB16 Arabidopsis thaliana AT5G15310 I
GLYMA09G04370 Glycine max GLYMA09G04370 I
GRMZM2G001223 Zea mays GRMZM2G001223 I
GRMZM2G051528 Zea mays GRMZM2G051528 I
GRMZM2G089686 Zea mays GRMZM2G089686 I
MLOC_39554 Hordeum vulgare MLOC_39554 I
Gorai.001G024300 Gossypium raimondii Gorai.001G024300 I
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I
LjSGA_034303.1 Lotus japonicus LjSGA_034303.1 N
evm.TU.supercontig_1.55 Carica papaya evm.TU.supercontig_1.55 N
evm.TU.supercontig_34.3 Carica papaya evm.TU.supercontig_34.3 N
MDP0000911051 Malus domestica MDP0000911051 N
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N
Pavir.Eb02286 Panicum virgatum Pavir.Eb02286 N
Pavir.J14839 Panicum virgatum Pavir.J14839 N
CM0385.220.nd Lotus japonicus CM0385.220.nd N
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N
cassava45648.m1 Manihot esculenta cassava45648.m1 N
LjSGA_057038.1 Lotus japonicus LjSGA_057038.1 N
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N
mgf020736m Mimulus guttatus mgf020736m N
e_gw1.1.4.1 Physcomitrella patens e_gw1.1.4.1 N
AMTR_s00009p00257950 Amborella trichopoda AMTR_s00009p00257950 N
cassava15703.m1 Manihot esculenta cassava15703.m1 N
29212.m000177 Ricinus communis 29212.m000177 N
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N
Traes_7AS_FD974A17F Triticum aestivum Traes_7AS_FD974A17F N
Traes_7AS_ADDEF000C Triticum aestivum Traes_7AS_ADDEF000C N
OLONG_024483 Oryza longistaminata OLONG_024483 N
MLOC_59184 Hordeum vulgare MLOC_59184 N
Bo4g198650 Brassica oleracea Bo4g198650 N
AMTR_s00057p00069720 Amborella trichopoda AMTR_s00057p00069720 N