CBN01059 (Caenorhabditis brenneri)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 CBN01059 T342189_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.832 0.832
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.832 0.832
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.832 0.832
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.832 0.832
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.832 0.832
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.832 0.832
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.832 0.832
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.832 0.832
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.832 0.832
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.832 0.832
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.737 0.737
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.737 0.737
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBN01059 TBP 162 244
CBN01059 TBP 252 335

Links

Other TBP family TFs
Other Caenorhabditis brenneri TFs

746 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DPBF3 Arabidopsis thaliana AT3G56850 D
FD Arabidopsis lyrata Al_scaffold_0007_453 I
AMTR_s00101p00038080 Amborella trichopoda AMTR_s00101p00038080 I
AMTR_s00114p00031980 Amborella trichopoda AMTR_s00114p00031980 I
ATBZIP27 Arabidopsis thaliana AT2G17770 I
EEL Arabidopsis thaliana AT2G41070 I
FD Arabidopsis thaliana AT4G35900 I
BGIOSGA000613 Oryza indica BGIOSGA000613 I
BGIOSGA004837 Oryza indica BGIOSGA004837 I
BGIOSGA010835 Oryza indica BGIOSGA010835 I
BGIOSGA020087 Oryza indica BGIOSGA020087 I
BGIOSGA026419 Oryza indica BGIOSGA026419 I
Bo4g012940 Brassica oleracea Bo4g012940 I
Bo4g112690 Brassica oleracea Bo4g112690 I
Bo6g072380 Brassica oleracea Bo6g072380 I
Bo8g091160 Brassica oleracea Bo8g091160 I
Bra007274 Brassica rapa Bra007274 I
Bra007276 Brassica rapa Bra007276 I
Bra014668 Brassica rapa Bra014668 I
Bra016953 Brassica rapa Bra016953 I
BRADI2G21820 Brachypodium distachyon BRADI2G21820 I
BRADI2G53060 Brachypodium distachyon BRADI2G53060 I
BRADI4G43850 Brachypodium distachyon BRADI4G43850 I
F775_17024 Aegilops tauschii F775_17024 I
F775_28711 Aegilops tauschii F775_28711 I
F775_31964 Aegilops tauschii F775_31964 I
F775_32479 Aegilops tauschii F775_32479 I
F775_43558 Aegilops tauschii F775_43558 I
EEL Arabidopsis lyrata fgenesh2_kg.4__2235__AT2G41070.2 I
GLYMA03G00580 Glycine max GLYMA03G00580 I
GLYMA04G14840 Glycine max GLYMA04G14840 I
GLYMA05G25200 Glycine max GLYMA05G25200 I
GLYMA06G47220 Glycine max GLYMA06G47220 I
GLYMA08G24340 Glycine max GLYMA08G24340 I
GLYMA15G35080 Glycine max GLYMA15G35080 I
GLYMA19G30230 Glycine max GLYMA19G30230 I
GRMZM2G077124 Zea mays GRMZM2G077124 I
GRMZM2G159134 Zea mays GRMZM2G159134 I
GRMZM2G161009 Zea mays GRMZM2G161009 I
GRMZM2G168079 Zea mays GRMZM2G168079 I
GSMUA_Achr11G15610_001 Musa acuminata GSMUA_Achr11G15610_001 I
GSMUA_Achr2G20490_001 Musa acuminata GSMUA_Achr2G20490_001 I
GSMUA_Achr3G22710_001 Musa acuminata GSMUA_Achr3G22710_001 I
GSMUA_Achr8G07740_001 Musa acuminata GSMUA_Achr8G07740_001 I
GSMUA_Achr8G21560_001 Musa acuminata GSMUA_Achr8G21560_001 I
GSMUA_AchrUn_randomG12190_001 Musa acuminata GSMUA_AchrUn_randomG12190_001 I
LPERR01G30010 Leersia perrieri LPERR01G30010 I
LPERR01G32620 Leersia perrieri LPERR01G32620 I
LPERR05G16840 Leersia perrieri LPERR05G16840 I
MLOC_16096 Hordeum vulgare MLOC_16096 I
MLOC_34679 Hordeum vulgare MLOC_34679 I
MLOC_4554 Hordeum vulgare MLOC_4554 I
MLOC_61490 Hordeum vulgare MLOC_61490 I
MLOC_6534 Hordeum vulgare MLOC_6534 I
MTR_3g010660 Medicago truncatula MTR_3g010660 I
MTR_7g088090 Medicago truncatula MTR_7g088090 I
MTR_8g043960 Medicago truncatula MTR_8g043960 I
OB01G43630 Oryza brachyantha OB01G43630 I
OB01G46760 Oryza brachyantha OB01G46760 I
OB05G28440 Oryza brachyantha OB05G28440 I
OB07G32300 Oryza brachyantha OB07G32300 I
OBART01G34790 Oryza barthii OBART01G34790 I
OBART01G37980 Oryza barthii OBART01G37980 I
OBART05G21000 Oryza barthii OBART05G21000 I
OBART07G26790 Oryza barthii OBART07G26790 I
OGLUM01G38810 Oryza glumaepatula OGLUM01G38810 I
OGLUM01G42150 Oryza glumaepatula OGLUM01G42150 I
OGLUM03G15730 Oryza glumaepatula OGLUM03G15730 I
OGLUM05G22240 Oryza glumaepatula OGLUM05G22240 I
OGLUM07G26780 Oryza glumaepatula OGLUM07G26780 I
OLONG_002030 Oryza longistaminata OLONG_002030 I
OLONG_003399 Oryza longistaminata OLONG_003399 I
OLONG_014546 Oryza longistaminata OLONG_014546 I
OMERI01G32080 Oryza meridionalis OMERI01G32080 I
OMERI01G34950 Oryza meridionalis OMERI01G34950 I
OMERI03G14020 Oryza meridionalis OMERI03G14020 I
OMERI05G18990 Oryza meridionalis OMERI05G18990 I
OMERI07G23410 Oryza meridionalis OMERI07G23410 I
ONIVA01G39770 Oryza nivara ONIVA01G39770 I
ONIVA03G16560 Oryza nivara ONIVA03G16560 I
ONIVA04G25730 Oryza nivara ONIVA04G25730 I
ONIVA05G21710 Oryza nivara ONIVA05G21710 I
ONIVA07G26520 Oryza nivara ONIVA07G26520 I
OPUNC01G33790 Oryza punctata OPUNC01G33790 I
OPUNC05G18710 Oryza punctata OPUNC05G18710 I
OPUNC07G25180 Oryza punctata OPUNC07G25180 I
ORGLA01G0286100 Oryza glaberrima ORGLA01G0286100 I
ORGLA01G0317900 Oryza glaberrima ORGLA01G0317900 I
ORGLA03G0149400 Oryza glaberrima ORGLA03G0149400 I
ORUFI01G38120 Oryza rufipogon ORUFI01G38120 I
ORUFI01G41310 Oryza rufipogon ORUFI01G41310 I
ORUFI05G22290 Oryza rufipogon ORUFI05G22290 I
ORUFI07G27740 Oryza rufipogon ORUFI07G27740 I
OS01G0813100 Oryza sativa OS01G0813100 I
OS01G0859300 Oryza sativa OS01G0859300 I
OS03G0322700 Oryza sativa OS03G0322700 I
OS05G0489700 Oryza sativa OS05G0489700 I
OS07G0686100 Oryza sativa OS07G0686100 I
PGSC0003DMG400007208 Solanum tuberosum PGSC0003DMG400007208 I
PGSC0003DMG400028121 Solanum tuberosum PGSC0003DMG400028121 I
PGSC0003DMG400029774 Solanum tuberosum PGSC0003DMG400029774 I
POPTR_0006s02670 Populus trichocarpa POPTR_0006s02670 I
POPTR_0008s01130 Populus trichocarpa POPTR_0008s01130 I
POPTR_0010s25440 Populus trichocarpa POPTR_0010s25440 I
POPTR_0010s25460 Populus trichocarpa POPTR_0010s25460 I
POPTR_0016s02460 Populus trichocarpa POPTR_0016s02460 I
PRUPE_ppa008716mg Prunus persica PRUPE_ppa008716mg I
PRUPE_ppa025544mg Prunus persica PRUPE_ppa025544mg I
Sb01g036810 Sorghum bicolor Sb01g036810 I
Sb02g043620 Sorghum bicolor Sb02g043620 I
Sb03g037740 Sorghum bicolor Sb03g037740 I
Sb03g040510 Sorghum bicolor Sb03g040510 I
Sb09g023920 Sorghum bicolor Sb09g023920 I
AREB3 Arabidopsis lyrata scaffold_502836.1 I
SELMODRAFT_227594 Selaginella moellendorffii SELMODRAFT_227594 I
SELMODRAFT_266892 Selaginella moellendorffii SELMODRAFT_266892 I
SELMODRAFT_443424 Selaginella moellendorffii SELMODRAFT_443424 I
SELMODRAFT_451399 Selaginella moellendorffii SELMODRAFT_451399 I
SELMODRAFT_91900 Selaginella moellendorffii SELMODRAFT_91900 I
SELMODRAFT_94516 Selaginella moellendorffii SELMODRAFT_94516 I
Si001731m.g Setaria italica Si001731m.g I
Si002173m.g Setaria italica Si002173m.g I
Si022639m.g Setaria italica Si022639m.g I
Solyc01g104650.2 Solanum lycopersicum Solyc01g104650.2 I
Solyc10g081350.1 Solanum lycopersicum Solyc10g081350.1 I
TCM_006432 Theobroma cacao TCM_006432 I
TCM_044596 Theobroma cacao TCM_044596 I
Traes_1AL_1FFBFB058 Triticum aestivum Traes_1AL_1FFBFB058 I
Traes_1BL_DE2CF9613 Triticum aestivum Traes_1BL_DE2CF9613 I
Traes_1DL_D9BA83221 Triticum aestivum Traes_1DL_D9BA83221 I
Traes_3AL_58F294736 Triticum aestivum Traes_3AL_58F294736 I
Traes_3AL_FC5523394 Triticum aestivum Traes_3AL_FC5523394 I
TRAES3BF001900070CFD_g Triticum aestivum TRAES3BF001900070CFD_g I
TRAES3BF099600130CFD_g Triticum aestivum TRAES3BF099600130CFD_g I
TRAES3BF111600130CFD_g Triticum aestivum TRAES3BF111600130CFD_g I
TRAES3BF111600160CFD_g Triticum aestivum TRAES3BF111600160CFD_g I
Traes_3DL_20ED2EA4C Triticum aestivum Traes_3DL_20ED2EA4C I
Traes_4AS_F9C171219 Triticum aestivum Traes_4AS_F9C171219 I
Traes_4BL_4C9A415F3 Triticum aestivum Traes_4BL_4C9A415F3 I
Traes_4DL_F38ED7FB6 Triticum aestivum Traes_4DL_F38ED7FB6 I
Traes_5BL_FB4EDEA83 Triticum aestivum Traes_5BL_FB4EDEA83 I
Traes_5DL_73CE92096 Triticum aestivum Traes_5DL_73CE92096 I
TRIUR3_06726 Triticum urartu TRIUR3_06726 I
TRIUR3_12792 Triticum urartu TRIUR3_12792 I
TRIUR3_15490 Triticum urartu TRIUR3_15490 I
TRIUR3_24203 Triticum urartu TRIUR3_24203 I
TRIUR3_29638 Triticum urartu TRIUR3_29638 I
TRIUR3_31111 Triticum urartu TRIUR3_31111 I
DPBF2 Vitis vinifera VIT_06s0080g00340 I
VIT_12s0055g00420 Vitis vinifera VIT_12s0055g00420 I
VIT_13s0175g00120 Vitis vinifera VIT_13s0175g00120 I
Ca_08143 Cicer arietinum Ca_08143 I
Ca_15706 Cicer arietinum Ca_15706 I
Ca_23748 Cicer arietinum Ca_23748 I
Cla000389 Citrullus lanatus Cla000389 I
Cla013878 Citrullus lanatus Cla013878 I
Pm004043 Prunus mume Pm004043 I
Pm016826 Prunus mume Pm016826 I
29955.m001177 Ricinus communis 29955.m001177 I
30226.m002055 Ricinus communis 30226.m002055 I
cassava22423.valid.m1 Manihot esculenta cassava22423.valid.m1 I
Cucsa.184670 Cucumis sativus Cucsa.184670 I
Cucsa.364380 Cucumis sativus Cucsa.364380 I
Cucsa.385090 Cucumis sativus Cucsa.385090 I
mgf002556m Mimulus guttatus mgf002556m I
mgf011003m Mimulus guttatus mgf011003m I
Aquca_009_00009 Aquilegia coerulea Aquca_009_00009 I
Aquca_023_00151 Aquilegia coerulea Aquca_023_00151 I
Aquca_072_00142 Aquilegia coerulea Aquca_072_00142 I
Bostr.12302s0127 Boechera stricta Bostr.12302s0127 I
Bostr.20505s0068 Boechera stricta Bostr.20505s0068 I
Bostr.9345s0024 Boechera stricta Bostr.9345s0024 I
Cagra.0578s0014 Capsella grandiflora Cagra.0578s0014 I
Cagra.1642s0072 Capsella grandiflora Cagra.1642s0072 I
Carubv10018770m.g Capsella rubella Carubv10018770m.g I
Carubv10023893m.g Capsella rubella Carubv10023893m.g I
Ciclev10001893m.g Citrus clementina Ciclev10001893m.g I
Ciclev10002029m.g Citrus clementina Ciclev10002029m.g I
Ciclev10012205m.g Citrus clementina Ciclev10012205m.g I
Eucgr.G00615 Eucalyptus grandis Eucgr.G00615 I
Eucgr.J00320 Eucalyptus grandis Eucgr.J00320 I
Eucgr.K01706 Eucalyptus grandis Eucgr.K01706 I
evm.TU.supercontig_33.182 Carica papaya evm.TU.supercontig_33.182 I
gene00393-v1.0-hybrid Fragaria vesca gene00393-v1.0-hybrid I
Gorai.002G207000 Gossypium raimondii Gorai.002G207000 I
Gorai.005G259700 Gossypium raimondii Gorai.005G259700 I
Gorai.009G301200 Gossypium raimondii Gorai.009G301200 I
Gorai.009G301400 Gossypium raimondii Gorai.009G301400 I
Lus10008927.g Linum usitatissimum Lus10008927.g I
Lus10028889.g Linum usitatissimum Lus10028889.g I
MDP0000198495 Malus domestica MDP0000198495 I
MDP0000215106 Malus domestica MDP0000215106 I
MDP0000273211 Malus domestica MDP0000273211 I
MDP0000706379 Malus domestica MDP0000706379 I
MDP0000740787 Malus domestica MDP0000740787 I
orange1.1g020697m.g Citrus sinensis orange1.1g020697m.g I
orange1.1g021146m.g Citrus sinensis orange1.1g021146m.g I
Pavir.Ba00263 Panicum virgatum Pavir.Ba00263 I
Pavir.Bb03699 Panicum virgatum Pavir.Bb03699 I
Pavir.Eb03523 Panicum virgatum Pavir.Eb03523 I
Pavir.Ib01001 Panicum virgatum Pavir.Ib01001 I
Pavir.J05672 Panicum virgatum Pavir.J05672 I
Pavir.J34085 Panicum virgatum Pavir.J34085 I
Pavir.J35078 Panicum virgatum Pavir.J35078 I
Pavir.J38875 Panicum virgatum Pavir.J38875 I
SapurV1A.0036s0930 Salix purpurea SapurV1A.0036s0930 I
SapurV1A.0036s0950 Salix purpurea SapurV1A.0036s0950 I
SapurV1A.0070s0720 Salix purpurea SapurV1A.0070s0720 I
SapurV1A.0362s0080 Salix purpurea SapurV1A.0362s0080 I
SapurV1A.2287s0010 Salix purpurea SapurV1A.2287s0010 I
Thhalv10006121m.g Eutrema salsugineum Thhalv10006121m.g I
Thhalv10017050m.g Eutrema salsugineum Thhalv10017050m.g I
chr4.CM0337.330.nc Lotus japonicus chr4.CM0337.330.nc I
LjSGA_023611.1 Lotus japonicus LjSGA_023611.1 I
mgf009464m Mimulus guttatus mgf009464m N