POPTR_0019s04890 (Populus trichocarpa)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 POPTR_0019s04890 T342839_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.855 0.855
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.855 0.855
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.801 0.801
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.794 0.794
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.825 0.825
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.825 0.825
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.825 0.825
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.825 0.825
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.825 0.825
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.825 0.825
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.825 0.825
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.825 0.825
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.825 0.825
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s04890.1 TBP 24 105
POPTR_0019s04890.1 TBP 113 196
POPTR_0019s04890.2 TBP 24 105
POPTR_0019s04890.2 TBP 106 165

Links

Other TBP family TFs
Other Populus trichocarpa TFs

793 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WT1 Homo sapiens ENSG00000184937 D
Wt1 Mus musculus ENSMUSG00000016458 D
ENSPPYG00000029822 Pongo abelii ENSPPYG00000029822 I
WT1 Taeniopygia guttata ENSTGUG00000004906 I
ENSSTOG00000023716 Ictidomys tridecemlineatus ENSSTOG00000023716 I
WT1 Sus scrofa ENSSSCG00000013316 I
ENSSHAG00000017390 Sarcophilus harrisii ENSSHAG00000017390 I
ENSSARG00000000207 Sorex araneus ENSSARG00000000207 I
Wt1 Rattus norvegicus ENSRNOG00000013074 I
WT1 Pan troglodytes ENSPTRG00000003476 I
ENSPSIG00000013679 Pelodiscus sinensis ENSPSIG00000013679 I
wt1b Tetraodon nigroviridis ENSTNIG00000013806 I
ENSPMAG00000008950 Petromyzon marinus ENSPMAG00000008950 I
ENSPFOG00000010572 Poecilia formosa ENSPFOG00000010572 I
WT1 Procavia capensis ENSPCAG00000002213 I
ENSPANG00000019482 Papio anubis ENSPANG00000019482 I
wt1 Oryzias latipes ENSORLG00000012424 I
wt1 Oryzias latipes ENSORLG00000009859 I
ENSOPRG00000015709 Ochotona princeps ENSOPRG00000015709 I
ENSONIG00000011043 Oreochromis niloticus ENSONIG00000011043 I
Gfo_R001970 Geospiza fortis Gfo_R001970 I
wt1.S Xenopus laevis XB-GENE-864792 I
wt1.L Xenopus laevis XB-GENE-6252376 I
wt1 Xenopus tropicalis XB-GENE-484999 I
B7ZSG3 Xenopus laevis B7ZSG3 I
B5DE03 Xenopus tropicalis B5DE03 I
fgenesh2_pm.scaffold_110000013 Branchiostoma floridae fgenesh2_pm.scaffold_110000013 I
fgenesh2_pg.scaffold_80000039 Branchiostoma floridae fgenesh2_pg.scaffold_80000039 I
Pvit_09510 Pogona vitticeps Pvit_09510 I
WT1 Otolemur garnettii ENSOGAG00000007118 I
ENSP00000331327 Macaca fascicularis ENSP00000331327 I
ENSP00000331327-D1 Bos grunniens ENSP00000331327-D1 I
Alligator_sinensis_CCG012951.1 Alligator sinensis Alligator_sinensis_CCG012951.1 I
Afo_R014628 Aptenodytes forsteri Afo_R014628 I
Aan_R006616 Calypte anna Aan_R006616 I
ENSXMAG00000005139 Xiphophorus maculatus ENSXMAG00000005139 I
ENSVPAG00000007788 Vicugna pacos ENSVPAG00000007788 I
wt1b Takifugu rubripes ENSTRUG00000006559 I
wt1a Danio rerio ENSDARG00000031420 I
wt1b Gasterosteus aculeatus ENSGACG00000016020 I
WT1 Felis catus ENSFCAG00000000308 I
ENSFALG00000010820 Ficedula albicollis ENSFALG00000010820 I
WT1 Echinops telfairi ENSETEG00000000684 I
ENSEEUG00000007221 Erinaceus europaeus ENSEEUG00000007221 I
ENSECAG00000022308 Equus caballus ENSECAG00000022308 I
Wt1 Dipodomys ordii ENSDORG00000013725 I
WT1 Dasypus novemcinctus ENSDNOG00000003652 I
WT1 Gallus gallus ENSGALG00000012115 I
wt1b Danio rerio ENSDARG00000007990 I
WT1 Callithrix jacchus ENSCJAG00000005900 I
WT1 Choloepus hoffmanni ENSCHOG00000006244 I
WT1 Canis familiaris ENSCAFG00000007426 I
WT1 Bos taurus ENSBTAG00000047268 I
ENSAPLG00000005775 Anas platyrhynchos ENSAPLG00000005775 I
ENSAMXG00000013017 Astyanax mexicanus ENSAMXG00000013017 I
ENSAMEG00000006957 Ailuropoda melanoleuca ENSAMEG00000006957 I
WT1 Myotis lucifugus ENSMLUG00000027523 I
ENSACAG00000002480 Anolis carolinensis ENSACAG00000002480 I
WT1 Oryctolagus cuniculus ENSOCUG00000005882 I
ENSOARG00000016334 Ovis aries ENSOARG00000016334 I
ENSOANG00000015147 Ornithorhynchus anatinus ENSOANG00000015147 I
ENSNLEG00000017890 Nomascus leucogenys ENSNLEG00000017890 I
ENSMPUG00000011307 Mustela putorius furo ENSMPUG00000011307 I
WT1 Monodelphis domestica ENSMODG00000009646 I
WT1 Macaca mulatta ENSMMUG00000009881 I
ENSONIG00000005545 Oreochromis niloticus ENSONIG00000005545 I
WT1 Microcebus murinus ENSMICG00000004097 I
ENSMGAG00000001489 Meleagris gallopavo ENSMGAG00000001489 I
ENSLOCG00000004537 Lepisosteus oculatus ENSLOCG00000004537 I
WT1 Loxodonta africana ENSLAFG00000006160 I
ENSLACG00000016378 Latimeria chalumnae ENSLACG00000016378 I
ENSGMOG00000012296 Gadus morhua ENSGMOG00000012296 I
WT1 Gorilla gorilla ENSGGOG00000011586 I