TCP17 (Arabidopsis thaliana)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 AT5G08070 T343693_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP17
M07290_2.00		 Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a		 (Direct) (Direct)
TCP17
M07291_2.00		 Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.932 0.496
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.932 0.496
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.929 0.583
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.925 0.565
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.897 0.470
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.847 0.391
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.832 0.383
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT5G08070.1 TCP 31 204
AT5G08070.2 TCP 31 204

Links

Other TCP family TFs
Other Arabidopsis thaliana TFs

294 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I
VIT_08s0058g00200 Vitis vinifera VIT_08s0058g00200 I
29814.m000741 Ricinus communis 29814.m000741 I
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I
TCM_042467 Theobroma cacao TCM_042467 N
gene21007-v1.0-hybrid Fragaria vesca gene21007-v1.0-hybrid N
MDP0000097759 Malus domestica MDP0000097759 N
MDP0000943251 Malus domestica MDP0000943251 N