CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Traes_6AL_DA27ABCA61 *(Triticum aestivum)* TCP
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03634 (TCP)	IPR005333	Traes_6AL_DA27ABCA61	T344477_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
TCP15 M00892_2.00	Arabidopsis thaliana	NNGGNCCCAC	GTGGGNCCNN	PBM Franco-Zorrilla et al.(2014) TCP15	0.973	0.606
TCP15 M07277_2.00	Arabidopsis thaliana	RTRGGDCCCACHH	DDGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At1g69690_col_a	0.973	0.606
TCP15 M07278_2.00	Arabidopsis thaliana	RTRGGNCCCACHW	WDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g69690_colamp_a	0.973	0.606
TCP15 M11394_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP15_01	0.973	0.606
PK12736.1 M01315_2.00	Cannabis sativa	NRRSCMYAYNNNNN	NNNNNRTRKGSYYN	PBM Lambert et al.(2019) pTH10121	0.971	0.657
TCP14 M07289_2.00	Arabidopsis thaliana	AVADAKVDBGTGGGDCCCAC	GTGGGHCCCACVHBMTHTBT	Dap-seq OMalley et al.(2016) TCP14_col_b	0.969	0.584
TCP8 M01311_2.00	Arabidopsis thaliana	NGGNMCCAC	GTGGKNCCN	PBM Lambert et al.(2019) pTH11569	0.959	0.562
LjSGA_053525.1 M02518_2.00	Lotus japonicus	GGNCCCAC	GTGGGNCC	PBM Weirauch et al.(2014) pTH9201	0.958	0.445
TCP22 M07279_2.00	Arabidopsis thaliana	RTRGGNCCCACHN	NDGTGGGNCCYAY	Dap-seq OMalley et al.(2016) At1g72010_colamp_a	0.957	0.518
TCP22 M07280_2.00	Arabidopsis thaliana	RTGGGDCCCACNN	NNGTGGGHCCCAY	Dap-seq OMalley et al.(2016) At1g72010_col	0.957	0.518
VIT_15s0048g01150 M02515_2.00	Vitis vinifera	NNGGNCCCAC	GTGGGNCCNN	PBM Weirauch et al.(2014) pTH9294	0.957	0.460
TCP19 M02504_2.00	Arabidopsis thaliana	NNGGVCCCAC	GTGGGBCCNN	PBM Weirauch et al.(2014) pTH7452	0.956	0.431
PCF2 M11399_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$PCF2_01	0.955	0.438
TCP20 M02502_2.00	Arabidopsis thaliana	GGSCCCACNN	NNGTGGGSCC	PBM Weirauch et al.(2014) pTH8159	0.954	0.431
TCP20 M07285_2.00	Arabidopsis thaliana	NNNNNNNNNNGTGGGRCCCAC	GTGGGYCCCACNNNNNNNNNN	Dap-seq OMalley et al.(2016) TCP20_col_a	0.954	0.431
TCP20 M07286_2.00	Arabidopsis thaliana	RTGGGDCCCACH	DGTGGGHCCCAY	Dap-seq OMalley et al.(2016) TCP20_colamp_a	0.954	0.431
TCP20 M11397_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP20_01	0.954	0.431
AT-TCP20 M02507_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9229	0.954	0.438
PK13314.1 M01316_2.00	Cannabis sativa	NNGGNCCCAC	GTGGGNCCNN	PBM Lambert et al.(2019) pTH11330	0.954	0.482
TCP9 M01086_2.00	Arabidopsis thaliana	NNGGGCCCACN	NGTGGGCCCNN	PBM Sullivan et al.(2014) pTH9796	0.954	0.460
TCP9 M07281_2.00	Arabidopsis thaliana	RTGGGDCCCAC	GTGGGHCCCAY	Dap-seq OMalley et al.(2016) At2g45680_colamp_a	0.954	0.460
TCP9 M07282_2.00	Arabidopsis thaliana	DGTGGGRCCCACDDNDNDNBN	NVNHNHNHHGTGGGYCCCACH	Dap-seq OMalley et al.(2016) At2g45680_col_b	0.954	0.460
TCP23 M00891_2.00	Arabidopsis thaliana	NNGGKCCCAC	GTGGGMCCNN	PBM Franco-Zorrilla et al.(2014) TCP23	0.953	0.540
GLYMA19G26560 M02511_2.00	Glycine max	BGGBCCCAC	GTGGGVCCV	PBM Weirauch et al.(2014) pTH9184	0.953	0.489
PK14653.1 M01317_2.00	Cannabis sativa	BGGSCCCAC	GTGGGSCCV	PBM Lambert et al.(2019) pTH11324	0.953	0.431
PK14653.1 M02517_2.00	Cannabis sativa	BTGGGCCCAV	BTGGGCCCAV	PBM Weirauch et al.(2014) pTH9586	0.953	0.431
fgenesh2_kg.8__1074__AT5G51910.2 M02509_2.00	Arabidopsis lyrata	GRSCCCAC	GTGGGSYC	PBM Weirauch et al.(2014) pTH9232	0.949	0.431
cassava45561.m1 M02516_2.00	Manihot esculenta	KGGVCCCACH	DGTGGGBCCM	PBM Weirauch et al.(2014) pTH9207	0.946	0.460
TCP7 M07294_2.00	Arabidopsis thaliana	RTGGGNCCCAC	GTGGGNCCCAY	Dap-seq OMalley et al.(2016) TCP7_col_a	0.942	0.438
OsI_08196 M02513_2.00	Oryza sativa	GGGCCCAC	GTGGGCCC	PBM Weirauch et al.(2014) pTH9274	0.939	0.401
OS02G0635800 M02512_2.00	Oryza sativa	NBGGGCCCVN	NBGGGCCCVN	PBM Weirauch et al.(2014) pTH8856	0.939	0.394
TCP21 M07292_2.00	Arabidopsis thaliana	NNRTGGGDCCCACN	NGTGGGHCCCAYNN	Dap-seq OMalley et al.(2016) At5g08330_col_a	0.938	0.416
TCP21 M07293_2.00	Arabidopsis thaliana	RTRGGDCCCACH	DGTGGGHCCYAY	Dap-seq OMalley et al.(2016) At5g08330_colamp_a	0.938	0.416
TCP11 M11395_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_01	0.909	0.453
TCP11 M11396_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TCP11_02	0.909	0.453
For this family, TFs with SR scores > 0.822* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Traes_6AL_DA27ABCA61.2	TCP	64	237	TSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSLSIPAHLRGALPSPGVRFGSRADAWDRVVGLGYPPEGPASSSSTPSPLLLNFHSGSVGLDVQPSPSAAAAAAAADLSRKRRWEQEMQQQQQQQH

Links
Other TCP family TFs
Other *Triticum aestivum* TFs

657 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
LYS14	Saccharomyces cerevisiae	YDR034C	D
SU7_0595	Saccharomyces arboricola	SU7_0595	I
SAKL0D03586g	Lachancea kluyveri	SAKL0D03586g	I
3859_YDR034C	Saccharomyces paradoxus	3859_YDR034C	I
3344_Multiple	Saccharomyces mikatae	3344_Multiple	I
21342_YDR034C	Saccharomyces bayanus	21342_YDR034C	I
ZYRO0A03058g	Zygosaccharomyces rouxii	ZYRO0A03058g	I
ZBAI_06624	Zygosaccharomyces bailii	ZBAI_06624	I
TPHA_0M01040	Tetrapisispora phaffii	TPHA_0M01040	I
TBLA_0I01890	Tetrapisispora blattae	TBLA_0I01890	I
AACERI_AaceriABL099W	Saccharomycetaceae sp ashbya aceri	AACERI_AaceriABL099W	I
SKUD_203807	Saccharomyces kudriavzevii	SKUD_203807	I
NDAI_0A05750	Naumovozyma dairenensis	NDAI_0A05750	I
Kpol_1061p11	Vanderwaltozyma polyspora	Kpol_1061p11	I
KNAG_0H01260	Kazachstania naganishii	KNAG_0H01260	I
KLLA0_F04213g	Kluyveromyces lactis	KLLA0_F04213g	I
KAFR_0E01250	Kazachstania africana	KAFR_0E01250	I
Ecym_5131	Eremothecium cymbalariae	Ecym_5131	I
CAGL0K11902g	Candida glabrata	CAGL0K11902g	I
LALA0_S02e08724g	Lachancea lanzarotensis	LALA0_S02e08724g	N
TDEL_0D03610	Torulaspora delbrueckii	TDEL_0D03610	N
KLTH0C07480g	Lachancea thermotolerans	KLTH0C07480g	N
KLTH0C07480g	Kluyveromyces thermotolerans	KLTH0C07480g	N
Kwal_23058	Kluyveromyces waltii	Kwal_23058	N
AGOS_ABL099W	Ashbya gossypii	AGOS_ABL099W	N

Traes_6AL_DA27ABCA61 (Triticum aestivum) TCP

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

657 Related TFs

Traes_6AL_DA27ABCA61 **(Triticum aestivum)
TCP**