CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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30174.m008721
(
Ricinus communis
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
30174.m008721
T344590_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TB1
M01312_2.00
Oryza sativa
GGSCCCCCYM
KRGGGGGSCC
PBM
Lambert et al.(2019)
pTH8740
0.834
0.458
PK19717.1
M01318_2.00
Cannabis sativa
GGGSCCCMC
GKGGGSCCC
PBM
Lambert et al.(2019)
pTH10142
0.830
0.413
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.829
0.368
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
30174.m008721
TCP
39
193
SSKRDRHSKIDTAQGPRDRRMRLSLKVAREFFDLQDKLCFDKASKTVEWLLIQSRPAIRKLFSTGLPSYSCSVGVAKSASSTSECEDVSGIDEAAVANIEGSKNSKGKKPSLSCVNKKKRPKASRKTAFHPLAKESREKARARARQRTEEKKRTR
Links
Other
TCP
family TFs
Other
Ricinus communis
TFs
158 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action