Carubv10023502m.g (Capsella rubella)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Carubv10023502m.g T344768_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.931 0.578
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.931 0.578
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.931 0.578
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.930 0.578
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.928 0.569
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.910 0.569
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.889 0.461
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.887 0.480
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.887 0.480
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.864 0.471
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.864 0.471
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.841 0.431
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.829 0.402
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023502m TCP 27 187

Links

Other TCP family TFs
Other Capsella rubella TFs

394 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TWIST1 Homo sapiens ENSG00000122691 D 0.000
Twist2 Mus musculus ENSMUSG00000007805 D 0.000
Twist1 Mus musculus ENSMUSG00000035799 D 0.000
twi Drosophila melanogaster FBgn0003900 D 0.000
CpipJ_CPIJ012827 Culex pipiens CpipJ_CPIJ012827 I 0.000
CpipJ_CPIJ012828 Culex pipiens CpipJ_CPIJ012828 I 0.000
AAEL002902 Aedes aegypti AAEL002902 I 0.000
ACEP23430 Atta cephalotes ACEP23430 I 0.000
ACYPI001448 Acyrthosiphon pisum ACYPI001448 I 0.000
AGAP011985 Anopheles gambiae AGAP011985 I 0.000
BGIBMGA008990 Bombyx mori BGIBMGA008990 I 0.000
CapteG111042 Capitella teleta CapteG111042 I 0.000
CapteG154829 Capitella teleta CapteG154829 I 0.000
CGI_10006631 Crassostrea gigas CGI_10006631 I 0.000
CGI_10013641 Crassostrea gigas CGI_10013641 I 0.000
CPIJ012827 Culex quinquefasciatus CPIJ012827 I 0.000
CPIJ012828 Culex quinquefasciatus CPIJ012828 I 0.000
DAPPUDRAFT_320202 Daphnia pulex DAPPUDRAFT_320202 I 0.000
EFV58362 Trichinella spiralis EFV58362 I 0.000
ENSACAG00000009715 Anolis carolinensis ENSACAG00000009715 I 0.000
twist1 Anolis carolinensis ENSACAG00000011825 I 0.000
ENSACAG00000015086 Anolis carolinensis ENSACAG00000015086 I 0.000
ENSAMEG00000008556 Ailuropoda melanoleuca ENSAMEG00000008556 I 0.000
ENSAMEG00000020165 Ailuropoda melanoleuca ENSAMEG00000020165 I 0.000
ENSAMXG00000024993 Astyanax mexicanus ENSAMXG00000024993 I 0.000
ENSAMXG00000025039 Astyanax mexicanus ENSAMXG00000025039 I 0.000
ENSAMXG00000025095 Astyanax mexicanus ENSAMXG00000025095 I 0.000
ENSAMXG00000025610 Astyanax mexicanus ENSAMXG00000025610 I 0.000
ENSAMXG00000025657 Astyanax mexicanus ENSAMXG00000025657 I 0.000
ENSAPLG00000000878 Anas platyrhynchos ENSAPLG00000000878 I 0.000
ENSAPLG00000007177 Anas platyrhynchos ENSAPLG00000007177 I 0.000
TWIST2 Bos taurus ENSBTAG00000021444 I 0.000
TWIST1 Bos taurus ENSBTAG00000046922 I 0.000
TWIST2 Canis familiaris ENSCAFG00000012469 I 0.000
TWIST2 Callithrix jacchus ENSCJAG00000023006 I 0.000
TWIST2 Cavia porcellus ENSCPOG00000025980 I 0.000
ENSCSAG00000018801 Chlorocebus sabaeus ENSCSAG00000018801 I 0.000
ENSCSAG00000019610 Chlorocebus sabaeus ENSCSAG00000019610 I 0.000
twist3 Danio rerio ENSDARG00000019646 I 0.000
twist1a Danio rerio ENSDARG00000030402 I 0.000
twist1b Danio rerio ENSDARG00000076010 I 0.000
twist2 Danio rerio ENSDARG00000078266 I 0.000
TWIST2 Dasypus novemcinctus ENSDNOG00000002434 I 0.000
TWIST1 Dasypus novemcinctus ENSDNOG00000037354 I 0.000
Twist2 Dipodomys ordii ENSDORG00000005906 I 0.000
ENSDORG00000012866 Dipodomys ordii ENSDORG00000012866 I 0.000
TWIST1 Erinaceus europaeus ENSEEUG00000015333 I 0.000
TWIST2 Echinops telfairi ENSETEG00000009809 I 0.000
ENSETEG00000013115 Echinops telfairi ENSETEG00000013115 I 0.000
ENSFALG00000009781 Ficedula albicollis ENSFALG00000009781 I 0.000
ENSFALG00000014990 Ficedula albicollis ENSFALG00000014990 I 0.000
ENSFALG00000015081 Ficedula albicollis ENSFALG00000015081 I 0.000
TWIST2 Homo sapiens ENSG00000233608 I 0.000
twist2 Gasterosteus aculeatus ENSGACG00000002227 I 0.000
twist3b Gasterosteus aculeatus ENSGACG00000004773 I 0.000
TWIST1 Gasterosteus aculeatus ENSGACG00000006420 I 0.000
twist3 Gasterosteus aculeatus ENSGACG00000007963 I 0.000
twist1b Gasterosteus aculeatus ENSGACG00000008070 I 0.000
ENSGALG00000004274 Gallus gallus ENSGALG00000004274 I 0.000
ENSGALG00000006321 Gallus gallus ENSGALG00000006321 I 0.000
ENSGALG00000026059 Gallus gallus ENSGALG00000026059 I 0.000
ENSGMOG00000002790 Gadus morhua ENSGMOG00000002790 I 0.000
ENSGMOG00000003155 Gadus morhua ENSGMOG00000003155 I 0.000
ENSLACG00000012096 Latimeria chalumnae ENSLACG00000012096 I 0.000
ENSLACG00000013366 Latimeria chalumnae ENSLACG00000013366 I 0.000
ENSLACG00000019113 Latimeria chalumnae ENSLACG00000019113 I 0.000
TWIST2 Loxodonta africana ENSLAFG00000032174 I 0.000
ENSLOCG00000017835 Lepisosteus oculatus ENSLOCG00000017835 I 0.000
ENSLOCG00000018198 Lepisosteus oculatus ENSLOCG00000018198 I 0.000
ENSLOCG00000018350 Lepisosteus oculatus ENSLOCG00000018350 I 0.000
ENSMEUG00000013853 Macropus eugenii ENSMEUG00000013853 I 0.000
ENSMGAG00000002218 Meleagris gallopavo ENSMGAG00000002218 I 0.000
TWIST1 Meleagris gallopavo ENSMGAG00000009311 I 0.000
TWIST1 Myotis lucifugus ENSMLUG00000007047 I 0.000
TWIST2 Myotis lucifugus ENSMLUG00000023316 I 0.000
TWIST1 Macaca mulatta ENSMMUG00000011173 I 0.000
TWIST2 Macaca mulatta ENSMMUG00000021909 I 0.000
ENSMODG00000001412 Monodelphis domestica ENSMODG00000001412 I 0.000
TWIST1 Monodelphis domestica ENSMODG00000023924 I 0.000
ENSMPUG00000019429 Mustela putorius furo ENSMPUG00000019429 I 0.000
ENSNLEG00000011342 Nomascus leucogenys ENSNLEG00000011342 I 0.000
ENSNLEG00000019264 Nomascus leucogenys ENSNLEG00000019264 I 0.000
TWIST1 Ornithorhynchus anatinus ENSOANG00000009614 I 0.000
ENSOANG00000012950 Ornithorhynchus anatinus ENSOANG00000012950 I 0.000
ENSOARG00000000265 Ovis aries ENSOARG00000000265 I 0.000
ENSOARG00000009754 Ovis aries ENSOARG00000009754 I 0.000
TWIST2 Oryctolagus cuniculus ENSOCUG00000004073 I 0.000
TWIST2 Otolemur garnettii ENSOGAG00000029007 I 0.000
ENSONIG00000020502 Oreochromis niloticus ENSONIG00000020502 I 0.000
ENSONIG00000020610 Oreochromis niloticus ENSONIG00000020610 I 0.000
ENSONIG00000021177 Oreochromis niloticus ENSONIG00000021177 I 0.000
ENSONIG00000021342 Oreochromis niloticus ENSONIG00000021342 I 0.000
ENSONIG00000021420 Oreochromis niloticus ENSONIG00000021420 I 0.000
TWIST2 Ochotona princeps ENSOPRG00000017069 I 0.000
TWIST1 Oryzias latipes ENSORLG00000004012 I 0.000
twist1 Oryzias latipes ENSORLG00000007251 I 0.000
twist3 Oryzias latipes ENSORLG00000016373 I 0.000
twist2 Oryzias latipes ENSORLG00000018096 I 0.000
ENSPANG00000001578 Papio anubis ENSPANG00000001578 I 0.000
ENSPFOG00000019887 Poecilia formosa ENSPFOG00000019887 I 0.000
ENSPFOG00000020053 Poecilia formosa ENSPFOG00000020053 I 0.000
ENSPFOG00000020314 Poecilia formosa ENSPFOG00000020314 I 0.000
ENSPFOG00000020501 Poecilia formosa ENSPFOG00000020501 I 0.000
ENSPMAG00000003993 Petromyzon marinus ENSPMAG00000003993 I 0.000
ENSPMAG00000010126 Petromyzon marinus ENSPMAG00000010126 I 0.000
ENSPPYG00000017754 Pongo abelii ENSPPYG00000017754 I 0.000
ENSPSIG00000001961 Pelodiscus sinensis ENSPSIG00000001961 I 0.000
ENSPSIG00000012843 Pelodiscus sinensis ENSPSIG00000012843 I 0.000
ENSPTRG00000018960 Pan troglodytes ENSPTRG00000018960 I 0.000
TWIST2 Pan troglodytes ENSPTRG00000033910 I 0.000
Twist1 Rattus norvegicus ENSRNOG00000011101 I 0.000
Twist2 Rattus norvegicus ENSRNOG00000020355 I 0.000
ENSSHAG00000003328 Sarcophilus harrisii ENSSHAG00000003328 I 0.000
TWIST1 Sus scrofa ENSSSCG00000015370 I 0.000
TWIST2 Sus scrofa ENSSSCG00000016343 I 0.000
ENSSTOG00000004633 Ictidomys tridecemlineatus ENSSTOG00000004633 I 0.000
TWIST1 Taeniopygia guttata ENSTGUG00000002643 I 0.000
ENSTGUG00000003194 Taeniopygia guttata ENSTGUG00000003194 I 0.000
ENSTGUG00000003756 Taeniopygia guttata ENSTGUG00000003756 I 0.000
twist3 Tetraodon nigroviridis ENSTNIG00000000441 I 0.000
twist2 Tetraodon nigroviridis ENSTNIG00000001562 I 0.000
TWIST1 Tetraodon nigroviridis ENSTNIG00000001678 I 0.000
twist1b Tetraodon nigroviridis ENSTNIG00000018440 I 0.000
twist2 Takifugu rubripes ENSTRUG00000006090 I 0.000
twist3 Takifugu rubripes ENSTRUG00000011374 I 0.000
twist3 Takifugu rubripes ENSTRUG00000012607 I 0.000
twist1 Takifugu rubripes ENSTRUG00000015797 I 0.000
ENSXMAG00000019787 Xiphophorus maculatus ENSXMAG00000019787 I 0.000
ENSXMAG00000019956 Xiphophorus maculatus ENSXMAG00000019956 I 0.000
ENSXMAG00000019999 Xiphophorus maculatus ENSXMAG00000019999 I 0.000
ENSXMAG00000020062 Xiphophorus maculatus ENSXMAG00000020062 I 0.000
ENSXMAG00000020142 Xiphophorus maculatus ENSXMAG00000020142 I 0.000
twi Drosophila simulans FBgn0016355 I 0.000
twi Drosophila virilis FBgn0020065 I 0.000
twi Drosophila erecta FBgn0064598 I 0.000
twi Drosophila yakuba FBgn0084444 I 0.000
GF13559 Drosophila ananassae FBgn0090588 I 0.000
GH20971 Drosophila grimshawi FBgn0128433 I 0.000
GI21307 Drosophila mojavensis FBgn0144037 I 0.000
GL11229 Drosophila persimilis FBgn0148838 I 0.000
GM15978 Drosophila sechellia FBgn0170894 I 0.000
GK19547 Drosophila willistoni FBgn0221545 I 0.000
twi Drosophila pseudoobscura FBgn0243556 I 0.000
GB40416 Apis mellifera GB40416 I 0.000
HelroG155122 Helobdella robusta HelroG155122 I 0.000
HMEL011603 Heliconius melpomene HMEL011603 I 0.000
ISCW009433 Ixodes scapularis ISCW009433 I 0.000
KGM_08280 Danaus plexippus KGM_08280 I 0.000
L798_05856 Zootermopsis nevadensis L798_05856 I 0.000
LotgiG179182 Lottia gigantea LotgiG179182 I 0.000
NEMVEDRAFT_v1g234699 Nematostella vectensis NEMVEDRAFT_v1g234699 I 0.000
NV10141 Nasonia vitripennis NV10141 I 0.000
PHUM396880 Pediculus humanus PHUM396880 I 0.000
RPRC000323 Rhodnius prolixus RPRC000323 I 0.000
SINV20920 Solenopsis invicta SINV20920 I 0.000
Smp_203270 Schistosoma mansoni Smp_203270 I 0.000
SPU_030059 Strongylocentrotus purpuratus SPU_030059 I 0.000
TC014598 Tribolium castaneum TC014598 I 0.000
tetur03g03150 Tetranychus urticae tetur03g03150 I 0.000
YQE_04855 Dendroctonus ponderosae YQE_04855 I 0.000
Aan_R001044 Calypte anna Aan_R001044 I 0.000
Aan_R002857 Calypte anna Aan_R002857 I 0.000
Afo_R010658 Aptenodytes forsteri Afo_R010658 I 0.000
Afo_R013292 Aptenodytes forsteri Afo_R013292 I 0.000
Alligator_sinensis_CCG002585.1 Alligator sinensis Alligator_sinensis_CCG002585.1 I 0.000
Alligator_sinensis_CCG005115.1 Alligator sinensis Alligator_sinensis_CCG005115.1 I 0.000
Alligator_sinensis_CCG008488.1 Alligator sinensis Alligator_sinensis_CCG008488.1 I 0.000
Brh_R012765 Buceros rhinoceros Brh_R012765 I 0.000
Cflo_04586--NP_001011637.1_APIME Camponotus floridanus Cflo_04586--NP_001011637.1_APIME I 0.000
Cmyd_10002489 Chelonia mydas Cmyd_10002489 I 0.000
Cmyd_10006750 Chelonia mydas Cmyd_10006750 I 0.000
ENSMMUP00000014629 Macaca fascicularis ENSMMUP00000014629 I 0.000
ENSP00000405176-D1 Bos grunniens ENSP00000405176-D1 I 0.000
Gfo_R002785 Geospiza fortis Gfo_R002785 I 0.000
Gfo_R012065 Geospiza fortis Gfo_R012065 I 0.000
Gfo_R014393 Geospiza fortis Gfo_R014393 I 0.000
Hsal_01530--NP_001011637.1_APIME Harpegnathos saltator Hsal_01530--NP_001011637.1_APIME I 0.000
Myotis_brandtii_Twist1_10031742 Myotis brandtii Myotis_brandtii_Twist1_10031742 I 0.000
Ogr01719 Ophisaurus gracilis Ogr01719 I 0.000
Ogr06591 Ophisaurus gracilis Ogr06591 I 0.000
Ogr11552 Ophisaurus gracilis Ogr11552 I 0.000
Ogr11553 Ophisaurus gracilis Ogr11553 I 0.000
Pvit_02271 Pogona vitticeps Pvit_02271 I 0.000
Pvit_05844 Pogona vitticeps Pvit_05844 I 0.000
estExt_gwp.C_4170045 Branchiostoma floridae estExt_gwp.C_4170045 I 0.000
fgenesh2_pm.scaffold_217000008 Branchiostoma floridae fgenesh2_pm.scaffold_217000008 I 0.000
Ocbimv22015922m.g Octopus bimaculoides Ocbimv22015922m.g I 0.000
Sakowv30001350m.g Saccoglossus kowalevskii Sakowv30001350m.g I 0.000
CLEC011700 Cimex lectularius CLEC011700 I 0.000
LCUP006189 Lucilia cuprina LCUP006189 I 0.000
LDEC006528 Leptinotarsa decemlineata LDEC006528 I 0.000
Sjc_0042560 Schistosoma japonicum Sjc_0042560 I 0.000
SMU15037660 Schmidtea mediterranea SMU15037660 I 0.000
twist1 Xenopus tropicalis XB-GENE-479802 I 0.000
twist2 Xenopus tropicalis XB-GENE-5878700 I 0.000
twist1.L Xenopus laevis XB-GENE-6255840 I 0.000
twist1.S Xenopus laevis XB-GENE-865309 I 0.000
AALB010655 Anopheles albimanus AALB010655 I 0.000
AARA000771 Anopheles arabiensis AARA000771 I 0.000
AATE005140 Anopheles atroparvus AATE005140 I 0.000
ACHR006076 Anopheles christyi ACHR006076 I 0.000
ACOM023427 Anopheles coluzzii ACOM023427 I 0.000
ACUA022223 Anopheles culicifacies ACUA022223 I 0.000
ADIR004364 Anopheles dirus ADIR004364 I 0.000
AEPI000695 Anopheles epiroticus AEPI000695 I 0.000
AFAF020800 Anopheles farauti AFAF020800 I 0.000
AFUN009694 Anopheles funestus AFUN009694 I 0.000
AMEC000330 Anopheles melas AMEC000330 I 0.000
AMEM016167 Anopheles merus AMEM016167 I 0.000
AMIN004405 Anopheles minimus AMIN004405 I 0.000
AQUA008654 Anopheles quadriannulatus AQUA008654 I 0.000
ASTEI05879 Anopheles stephensi ASTEI05879 I 0.000
BGLB003400 Biomphalaria glabrata BGLB003400 I 0.000
BGLB010605 Biomphalaria glabrata BGLB010605 I 0.000
LLOJ002131 Lutzomyia longipalpis LLOJ002131 I 0.000
MDOA005417 Musca domestica MDOA005417 I 0.000
PPAI002101 Phlebotomus papatasi PPAI002101 I 0.000
A_07561 Schistosoma haematobium A_07561 I 0.000
csin110283 Clonorchis sinensis csin110283 I 0.000
D917_00468 Trichinella nativa D917_00468 I 0.000
D918_07072 Trichuris suis D918_07072 I 0.000
DILT_0001206901 Diphyllobothrium latum DILT_0001206901 I 0.000
ECANG7_02703 Echinococcus canadensis ECANG7_02703 I 0.000
ECPE_0000551801 Echinostoma caproni ECPE_0000551801 I 0.000
EmuJ_000663800 Echinococcus multilocularis EmuJ_000663800 I 0.000
HDID_0001003601 Hymenolepis diminuta HDID_0001003601 I 0.000
HmN_000912800 Hymenolepis microstoma HmN_000912800 I 0.000
HNAJ_0000179601 Hymenolepis nana HNAJ_0000179601 I 0.000
MCOS_0000111401 Mesocestoides corti MCOS_0000111401 I 0.000
nRc.2.0.1.g46228 Romanomermis culicivorax nRc.2.0.1.g46228 I 0.000
SSLN_0000059301 Schistocephalus solidus SSLN_0000059301 I 0.000
TASK_0000180901 Taenia asiatica TASK_0000180901 I 0.000
TMUE_s0004013100 Trichuris muris TMUE_s0004013100 I 0.000
TsM_000716700 Taenia solium TsM_000716700 I 0.000
TTRE_0000397101 Trichuris trichiura TTRE_0000397101 I 0.000