Ciclev10015871m.g (Citrus clementina)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 Ciclev10015871m.g T344781_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.951 0.638
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.951 0.638
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.951 0.638
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.951 0.681
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.946 0.670
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.937 0.681
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.918 0.511
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.911 0.521
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.911 0.521
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.898 0.489
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.848 0.447
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.847 0.468
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.847 0.468
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.841 0.447
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10015871m TCP 22 165

Links

Other TCP family TFs
Other Citrus clementina TFs

424 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PDK_20s1464821g001 Phoenix dactylifera PDK_20s1464821g001 I 0.000
AMTR_s00009p00242790 Amborella trichopoda AMTR_s00009p00242790 I 0.000
PGSC0003DMG402030621 Solanum tuberosum PGSC0003DMG402030621 I 0.000
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.000
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.000
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.000
Si000845m.g Setaria italica Si000845m.g I 0.000
Si012401m.g Setaria italica Si012401m.g I 0.000
TCM_037645 Theobroma cacao TCM_037645 I 0.000
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.000
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.000
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.000
GSMUA_Achr11G21270_001 Musa acuminata GSMUA_Achr11G21270_001 I 0.000
GLYMA03G30940 Glycine max GLYMA03G30940 I 0.000
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.000
29739.m003684 Ricinus communis 29739.m003684 I 0.000
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.000
F775_14190 Aegilops tauschii F775_14190 I 0.000
F775_11347 Aegilops tauschii F775_11347 I 0.000
cassava8594.m1 Manihot esculenta cassava8594.m1 I 0.000
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I 0.000
ORUFI04G22910 Oryza rufipogon ORUFI04G22910 N 0.000
Pavir.J34298 Panicum virgatum Pavir.J34298 N 0.000
ORUFI04G22890 Oryza rufipogon ORUFI04G22890 N 0.000
ORUFI01G23050 Oryza rufipogon ORUFI01G23050 N 0.000
ORGLA11G0077500 Oryza glaberrima ORGLA11G0077500 N 0.000
ORGLA04G0183800 Oryza glaberrima ORGLA04G0183800 N 0.000
OMERI01G18770 Oryza meridionalis OMERI01G18770 N 0.000
OPUNC04G19040 Oryza punctata OPUNC04G19040 N 0.000
OPUNC04G19030 Oryza punctata OPUNC04G19030 N 0.000
ONIVA04G19860 Oryza nivara ONIVA04G19860 N 0.000
ONIVA04G19650 Oryza nivara ONIVA04G19650 N 0.000
ORUFI11G09150 Oryza rufipogon ORUFI11G09150 N 0.000
OS04G0557200 Oryza sativa OS04G0557200 N 0.000
OS04G0557800 Oryza sativa OS04G0557800 N 0.000
Sb06g025020 Sorghum bicolor Sb06g025020 N 0.000
Pavir.Gb01093 Panicum virgatum Pavir.Gb01093 N 0.000
Pavir.Cb00833 Panicum virgatum Pavir.Cb00833 N 0.000
Traes_2AL_4F71A8FB4 Triticum aestivum Traes_2AL_4F71A8FB4 N 0.000
Traes_2DL_099D4CA9B Triticum aestivum Traes_2DL_099D4CA9B N 0.000
TRIUR3_18279 Triticum urartu TRIUR3_18279 N 0.000
TRIUR3_35186 Triticum urartu TRIUR3_35186 N 0.000
TRIUR3_26157 Triticum urartu TRIUR3_26157 N 0.000
F775_18830 Aegilops tauschii F775_18830 N 0.000
OB01G30110 Oryza brachyantha OB01G30110 N 0.000
MLOC_38470 Hordeum vulgare MLOC_38470 N 0.000
LPERR08G11070 Leersia perrieri LPERR08G11070 N 0.000
LPERR04G17390 Leersia perrieri LPERR04G17390 N 0.000
LPERR04G17380 Leersia perrieri LPERR04G17380 N 0.000
GSMUA_Achr5G20600_001 Musa acuminata GSMUA_Achr5G20600_001 N 0.000
GRMZM5G822829 Zea mays GRMZM5G822829 N 0.000
F775_19744 Aegilops tauschii F775_19744 N 0.000
OB02G27530 Oryza brachyantha OB02G27530 N 0.000
F775_10624 Aegilops tauschii F775_10624 N 0.000
BGIOSGA015472 Oryza indica BGIOSGA015472 N 0.000
BGIOSGA014567 Oryza indica BGIOSGA014567 N 0.000
BGIOSGA014566 Oryza indica BGIOSGA014566 N 0.000
BGIOSGA014565 Oryza indica BGIOSGA014565 N 0.000
BGIOSGA003821 Oryza indica BGIOSGA003821 N 0.000
BGIOSGA003819 Oryza indica BGIOSGA003819 N 0.000
OGLUM04G21260 Oryza glumaepatula OGLUM04G21260 N 0.000
ONIVA01G22920 Oryza nivara ONIVA01G22920 N 0.000
OMERI04G17820 Oryza meridionalis OMERI04G17820 N 0.000
OMERI04G17790 Oryza meridionalis OMERI04G17790 N 0.000
OMERI01G18860 Oryza meridionalis OMERI01G18860 N 0.000
OLONG_016960 Oryza longistaminata OLONG_016960 N 0.000
OLONG_016958 Oryza longistaminata OLONG_016958 N 0.000
OLONG_009946 Oryza longistaminata OLONG_009946 N 0.000
OGLUM04G21350 Oryza glumaepatula OGLUM04G21350 N 0.000
ONIVA01G22980 Oryza nivara ONIVA01G22980 N 0.000
OGLUM01G23970 Oryza glumaepatula OGLUM01G23970 N 0.000
OBART04G21370 Oryza barthii OBART04G21370 N 0.000
OBART04G21320 Oryza barthii OBART04G21320 N 0.000
OBART01G20350 Oryza barthii OBART01G20350 N 0.000
OB04G28390 Oryza brachyantha OB04G28390 N 0.000
OB04G28380 Oryza brachyantha OB04G28380 N 0.000
OB04G28350 Oryza brachyantha OB04G28350 N 0.000