MDP0000916623 (Malus domestica)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 MDP0000916623 T344966_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.951 0.444
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.948 0.437
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.947 0.404
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.947 0.404
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.947 0.404
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.932 0.404
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.897 0.331
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.883 0.331
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.881 0.325
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.854 0.305
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.829 0.272
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.828 0.325
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000916623 TCP 22 258

Links

Other TCP family TFs
Other Malus domestica TFs

400 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NAC073 Arabidopsis thaliana AT4G28500 D
Bostr.12659s0396 Boechera stricta Bostr.12659s0396 I
Eucgr.J02254 Eucalyptus grandis Eucgr.J02254 I
Ciclev10031598m.g Citrus clementina Ciclev10031598m.g I
Ciclev10015507m.g Citrus clementina Ciclev10015507m.g I
Carubv10009087m.g Capsella rubella Carubv10009087m.g I
Carubv10005324m.g Capsella rubella Carubv10005324m.g I
Carubv10002665m.g Capsella rubella Carubv10002665m.g I
Cagra.3166s0054 Capsella grandiflora Cagra.3166s0054 I
Cagra.1225s0041 Capsella grandiflora Cagra.1225s0041 I
Cagra.11546s0003 Capsella grandiflora Cagra.11546s0003 I
gene03875-v1.0-hybrid Fragaria vesca gene03875-v1.0-hybrid I
Aquca_054_00006 Aquilegia coerulea Aquca_054_00006 I
mgf018486m Mimulus guttatus mgf018486m I
mgf012882m Mimulus guttatus mgf012882m I
Cucsa.283900 Cucumis sativus Cucsa.283900 I
Cucsa.011210 Cucumis sativus Cucsa.011210 I
cassava3690.m1 Manihot esculenta cassava3690.m1 I
cassava12330.valid.m1 Manihot esculenta cassava12330.valid.m1 I
29917.m002016 Ricinus communis 29917.m002016 I
SapurV1A.0716s0010 Salix purpurea SapurV1A.0716s0010 I
PDK_20s1306131g001 Phoenix dactylifera PDK_20s1306131g001 I
chr2.CM0749.410.nc Lotus japonicus chr2.CM0749.410.nc I
PK25812.1 Cannabis sativa PK25812.1 I
PK17141.1 Cannabis sativa PK17141.1 I
Thhalv10025819m.g Eutrema salsugineum Thhalv10025819m.g I
Thhalv10007551m.g Eutrema salsugineum Thhalv10007551m.g I
SapurV1A.2846s0020 Salix purpurea SapurV1A.2846s0020 I
SapurV1A.1388s0020 Salix purpurea SapurV1A.1388s0020 I
cassava14633.m1 Manihot esculenta cassava14633.m1 I
SapurV1A.0304s0050 Salix purpurea SapurV1A.0304s0050 I
SapurV1A.0079s0500 Salix purpurea SapurV1A.0079s0500 I
Pavir.Da01643 Panicum virgatum Pavir.Da01643 I
orange1.1g014310m.g Citrus sinensis orange1.1g014310m.g I
Lus10021708.g Linum usitatissimum Lus10021708.g I
Gorai.008G186300 Gossypium raimondii Gorai.008G186300 I
Gorai.007G075300 Gossypium raimondii Gorai.007G075300 I
Gorai.006G034600 Gossypium raimondii Gorai.006G034600 I
GLYMA01G22510 Glycine max GLYMA01G22510 I
PGSC0003DMG400000809 Solanum tuberosum PGSC0003DMG400000809 I
MTR_7g033320 Medicago truncatula MTR_7g033320 I
29738.m001046 Ricinus communis 29738.m001046 I
MTR_1g093680 Medicago truncatula MTR_1g093680 I
MTR_1g093670 Medicago truncatula MTR_1g093670 I
GSMUA_Achr3G07330_001 Musa acuminata GSMUA_Achr3G07330_001 I
GLYMA20G32690 Glycine max GLYMA20G32690 I
GLYMA02G11140 Glycine max GLYMA02G11140 I
MTR_5g053430 Medicago truncatula MTR_5g053430 I
Bra024197 Brassica rapa Bra024197 I
Bra011034 Brassica rapa Bra011034 I
Bra006257 Brassica rapa Bra006257 I
Bo1g017410 Brassica oleracea Bo1g017410 I
anac085 Arabidopsis thaliana AT5G14490 I
SOG1 Arabidopsis thaliana AT1G25580 I
ANAC073 Arabidopsis lyrata Al_scaffold_0007_1273 I
anac085 Arabidopsis lyrata Al_scaffold_0006_1351 I
TCM_016984 Theobroma cacao TCM_016984 I
Pm029010 Prunus mume Pm029010 I
Pm015625 Prunus mume Pm015625 I
Cla020673 Citrullus lanatus Cla020673 I
Cla004701 Citrullus lanatus Cla004701 I
VIT_14s0066g00360 Vitis vinifera VIT_14s0066g00360 I
SOG1 Vitis vinifera VIT_01s0011g02990 I
Traes_6AL_C14335DC8 Triticum aestivum Traes_6AL_C14335DC8 I
POPTR_0001s35490 Populus trichocarpa POPTR_0001s35490 I
TCM_011869 Theobroma cacao TCM_011869 I
SOG1 Arabidopsis lyrata scaffold_102939.1 I
PRUPE_ppa006948mg Prunus persica PRUPE_ppa006948mg I
PRUPE_ppa005648mg Prunus persica PRUPE_ppa005648mg I
POPTR_0010s13980 Populus trichocarpa POPTR_0010s13980 I
POPTR_0008s11550 Populus trichocarpa POPTR_0008s11550 I
GLYMA19G08510 Glycine max GLYMA19G08510 N
GLYMA16G07501 Glycine max GLYMA16G07501 N
Lus10003668.g Linum usitatissimum Lus10003668.g N
Bostr.1460s0050 Boechera stricta Bostr.1460s0050 N
Cagra.1561s0026 Capsella grandiflora Cagra.1561s0026 N
Bra001000 Brassica rapa Bra001000 N
Thhalv10015728m.g Eutrema salsugineum Thhalv10015728m.g N
Thhalv10022099m.g Eutrema salsugineum Thhalv10022099m.g N
anac044 Arabidopsis thaliana AT3G01600 N
anac044 Arabidopsis lyrata Al_scaffold_0003_51 N
Carubv10014004m.g Capsella rubella Carubv10014004m.g N