Pavir.Eb02050 (Panicum virgatum)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03638 (TCR) IPR005172 Pavir.Eb02050 T346132_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.293
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.280
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.280
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.280
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.280
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.280
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.270
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.267
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.267
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.267
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.267
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.267
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.267
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.267
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.267
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.263
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.254
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.253
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.250
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.250
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.240
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.237
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.237
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.237
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.237
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.237
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.237
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.230
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb02050.1.p TCR/CxC 25 62
Pavir.Eb02050.2.p TCR/CxC 25 62

Links

Other TCR/CxC family TFs
Other Panicum virgatum TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF7 Arabidopsis thaliana AT3G20310 D
ERF4 Arabidopsis thaliana AT3G15210 D
MTR_3g053690 Medicago truncatula MTR_3g053690 I
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I
OMERI02G07840 Oryza meridionalis OMERI02G07840 I
OPUNC02G05940 Oryza punctata OPUNC02G05940 I
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I
Sb04g006080 Sorghum bicolor Sb04g006080 I
ATERF-4 Arabidopsis lyrata scaffold_301765.1 I
SELMODRAFT_129122 Selaginella moellendorffii SELMODRAFT_129122 I
SELMODRAFT_17648 Selaginella moellendorffii SELMODRAFT_17648 I
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I
Ca_20544 Cicer arietinum Ca_20544 I
cassava34729.m1 Manihot esculenta cassava34729.m1 I
Bostr.19424s0625 Boechera stricta Bostr.19424s0625 I
Bostr.26675s0388 Boechera stricta Bostr.26675s0388 I
Cagra.0316s0033 Capsella grandiflora Cagra.0316s0033 I
Carubv10014475m.g Capsella rubella Carubv10014475m.g I
Eucgr.K00734 Eucalyptus grandis Eucgr.K00734 I
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I
GLYMA08G43300 Glycine max GLYMA08G43300 I
GLYMA12G13315 Glycine max GLYMA12G13315 I
GLYMA14G02360 Glycine max GLYMA14G02360 I
GLYMA18G10290 Glycine max GLYMA18G10290 I
GRMZM2G020150 Zea mays GRMZM2G020150 I
GLYMA06G44430 Glycine max GLYMA06G44430 I
GRMZM2G079653 Zea mays GRMZM2G079653 I
GRMZM2G146028 Zea mays GRMZM2G146028 I
GLYMA02G46340 Glycine max GLYMA02G46340 I
ATERF-7 Arabidopsis lyrata fgenesh2_kg.3__2255__AT3G20310.1 I
GRMZM2G174347 Zea mays GRMZM2G174347 I
BRADI3G04410 Brachypodium distachyon BRADI3G04410 I
Bra038261 Brassica rapa Bra038261 I
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I
Bra035792 Brassica rapa Bra035792 I
Bra018864 Brassica rapa Bra018864 I
Bra001784 Brassica rapa Bra001784 I
Bo5g109800 Brassica oleracea Bo5g109800 I
Bo3g074840 Brassica oleracea Bo3g074840 I
LPERR02G05920 Leersia perrieri LPERR02G05920 I
Bo1g108970 Brassica oleracea Bo1g108970 I
Sb10g028110 Sorghum bicolor Sb10g028110 N
Pavir.Db00303 Panicum virgatum Pavir.Db00303 N
LPERR06G21240 Leersia perrieri LPERR06G21240 N
OS06G0691100 Oryza sativa OS06G0691100 N
ORUFI06G27450 Oryza rufipogon ORUFI06G27450 N
GRMZM2G175543 Zea mays GRMZM2G175543 N
ORGLA02G0040900 Oryza glaberrima ORGLA02G0040900 N
OPUNC06G23160 Oryza punctata OPUNC06G23160 N
ONIVA06G28540 Oryza nivara ONIVA06G28540 N
ONIVA02G04420 Oryza nivara ONIVA02G04420 N
OMERI06G25700 Oryza meridionalis OMERI06G25700 N
LPERR02G03850 Leersia perrieri LPERR02G03850 N
OGLUM06G26910 Oryza glumaepatula OGLUM06G26910 N
OGLUM02G04330 Oryza glumaepatula OGLUM02G04330 N
OBART06G25530 Oryza barthii OBART06G25530 N