CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

WRKY35 *(Arabidopsis lyrata)* WRKY
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03106 (WRKY)	IPR003657	fgenesh2_kg.4__1506__AT2G34830.1	T352577_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
WRKY14 M00731_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Chang et al.(2013) pTH7570	0.896	0.983
WRKY14 M07375_2.00	Arabidopsis thaliana	NAAAGTCAACGNN	NNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_col_a	0.896	0.983
WRKY14 M07376_2.00	Arabidopsis thaliana	NAAAGTCAACGNH	DNCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY14_colamp_a	0.896	0.983
WRKY65 M07372_2.00	Arabidopsis thaliana	NWWAGTCAACG	CGTTGACTWWN	Dap-seq OMalley et al.(2016) WRKY65_col_a	0.896	0.881
WRKY65 M07373_2.00	Arabidopsis thaliana	NAAAGTCAACGN	NCGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY65_colamp_a	0.896	0.881
WRKY27 M02566_2.00	Arabidopsis thaliana	NNGTCHDNN	NNHDGACNN	PBM Weirauch et al.(2014) pTH8188	0.895	0.831
WRKY27 M07430_2.00	Arabidopsis thaliana	MAAAGTCAACKNH	DNMGTTGACTTTK	Dap-seq OMalley et al.(2016) WRKY27_col_a	0.895	0.831
WRKY27 M07431_2.00	Arabidopsis thaliana	HAAAGTCAACKNH	DNMGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY27_colamp_a	0.895	0.831
WRKY22 M02557_2.00	Arabidopsis thaliana	NNNKTMHDNN	NNHDKAMNNN	PBM Weirauch et al.(2014) pTH7320	0.888	0.831
WRKY22 M07400_2.00	Arabidopsis thaliana	AAAAGTCAACKNH	DNMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY22_colamp_a	0.888	0.831
WRKY22 M07401_2.00	Arabidopsis thaliana	NAAAGTCAACKNH	DNMGTTGACTTTN	Dap-seq OMalley et al.(2016) WRKY22_col	0.888	0.831
WRKY29 M02558_2.00	Arabidopsis thaliana	NNNGTCHDNN	NNHDGACNNN	PBM Weirauch et al.(2014) pTH9604	0.873	0.780
WRKY29 M07410_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY29_col_a	0.873	0.780
WRKY29 M07411_2.00	Arabidopsis thaliana	HWWAGTCAAMDNN	NNHKTTGACTWWD	Dap-seq OMalley et al.(2016) WRKY29_colamp_a	0.873	0.780
WRKY21 M02553_2.00	Arabidopsis thaliana	NNRGTCAAMN	NKTTGACYNN	PBM Weirauch et al.(2014) pTH7422	0.871	0.712
WRKY21 M07389_2.00	Arabidopsis thaliana	HAAAGTCAACNNH	DNNGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_colamp_a	0.871	0.712
WRKY21 M07390_2.00	Arabidopsis thaliana	HAAAGTCAACK	MGTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY21_col	0.871	0.712
Q40828_PETCR M11467_2.00	Petroselinum crispum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY_Q2	0.860	0.678
WRKY11 M02559_2.00	Arabidopsis thaliana	NDGTCAAHNN	NNDTTGACHN	PBM Weirauch et al.(2014) pTH8091	0.856	0.644
WRKY11 M07415_2.00	Arabidopsis thaliana	NHAAAGTCAACBNH	DNVGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY11_col_a	0.856	0.644
WRKY11 M11464_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRKY11_Q2	0.856	0.644
WRKY15 M02549_2.00	Arabidopsis thaliana	NRGTCAAMNN	NNKTTGACYN	PBM Weirauch et al.(2014) pTH7602	0.854	0.644
WRKY15 M07383_2.00	Arabidopsis thaliana	AAAAGTCAACKN	NMGTTGACTTTT	Dap-seq OMalley et al.(2016) WRKY15_colamp_a	0.854	0.644
WRKY15 M07384_2.00	Arabidopsis thaliana	NWAAGTCAACB	VGTTGACTTWN	Dap-seq OMalley et al.(2016) WRKY15_col_b	0.854	0.644
WRKY17 M02550_2.00	Arabidopsis thaliana	NNDGTCAAHN	NDTTGACHNN	PBM Weirauch et al.(2014) pTH8088	0.853	0.627
WRKY17 M07385_2.00	Arabidopsis thaliana	NHAAAGTCAACRNN	NNYGTTGACTTTDN	Dap-seq OMalley et al.(2016) WRKY17_col_a	0.853	0.627
WRKY17 M07386_2.00	Arabidopsis thaliana	NMAAAGTCAACGN	NCGTTGACTTTKN	Dap-seq OMalley et al.(2016) WRKY17_colamp_a	0.853	0.627
WRKY7 M07412_2.00	Arabidopsis thaliana	NNDDDNNNNMAAAGTCAACGV	BCGTTGACTTTKNNNNHHHNN	Dap-seq OMalley et al.(2016) WRKY7_colamp_a	0.852	0.661
WRKY7 M07413_2.00	Arabidopsis thaliana	NAAAAGTCAACKNN	NNMGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY7_col	0.852	0.661
WRKY48 M02565_2.00	Arabidopsis thaliana	NNVGTCADNN	NNHTGACBNN	PBM Weirauch et al.(2014) pTH7552	0.837	0.542
WRKY8 M02564_2.00	Arabidopsis thaliana	NRGTCAAHN	NDTTGACYN	PBM Weirauch et al.(2014) pTH7554	0.834	0.559
WRKY8 M07428_2.00	Arabidopsis thaliana	NAAAAGTCAACRNHW	WDNYGTTGACTTTTN	Dap-seq OMalley et al.(2016) WRKY8_colamp_a	0.834	0.559
WRKY8 M07429_2.00	Arabidopsis thaliana	NNVAAAGTCAACRNH	DNYGTTGACTTTBNN	Dap-seq OMalley et al.(2016) WRKY8_col	0.834	0.559
WRKY28 M07406_2.00	Arabidopsis thaliana	HAAAGTCAAMNNH	DNNKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY28_col_a	0.834	0.542
WRKY28 M07407_2.00	Arabidopsis thaliana	VAAAGTCAAMG	CKTTGACTTTB	Dap-seq OMalley et al.(2016) WRKY28_colamp_a	0.834	0.542
WRKY71 M07374_2.00	Arabidopsis thaliana	HAAAGTCAAMN	NKTTGACTTTD	Dap-seq OMalley et al.(2016) WRKY71_col_a	0.833	0.542
ZAP1 M00982_2.00	Arabidopsis thaliana	NRGTCAAN	NTTGACYN	PBM Lindemose et al.(2014) WRKY1	0.830	0.576
WRKY57 M02547_2.00	Arabidopsis thaliana	NNRGTCAAHN	NDTTGACYNN	PBM Weirauch et al.(2014) pTH7917	0.822	0.508
WRKY23 M02556_2.00	Arabidopsis thaliana	RGTCAACG	CGTTGACY	PBM Weirauch et al.(2014) pTH7387	0.821	0.508
WRKY23 M01089_2.00	Arabidopsis thaliana	NRGTCAAM	KTTGACYN	PBM Sullivan et al.(2014) pTH7671	0.821	0.508
WRKY59 M07382_2.00	Arabidopsis thaliana	NDWWAGTCAAMN	NKTTGACTWWHN	Dap-seq OMalley et al.(2016) WRKY59_col_a	0.818	0.492
fgenesh1_pg.C_Chr_11.0001000193 M02570_2.00	Ostreococcus tauri	NRGTCARNN	NNYTGACYN	PBM Weirauch et al.(2014) pTH9432	0.813	0.492
For this family, TFs with SR scores > 0.808* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
fgenesh2_kg.4__1506__AT2G34830.1	WRKY	216	274	SDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHP

Links
Other WRKY family TFs
Other *Arabidopsis lyrata* TFs

1628 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
FOXN3	Homo sapiens	ENSG00000053254	D
Foxn3	Rattus norvegicus	ENSRNOG00000004709	I
Foxn3	Mus musculus	ENSMUSG00000033713	I
ENSNLEG00000016989	Nomascus leucogenys	ENSNLEG00000016989	I
FOXN3	Oryctolagus cuniculus	ENSOCUG00000004392	I
FOXN3	Ochotona princeps	ENSOPRG00000002931	I
ENSPANG00000016397	Papio anubis	ENSPANG00000016397	I
FOXN3	Procavia capensis	ENSPCAG00000013761	I
ENSPSIG00000013517	Pelodiscus sinensis	ENSPSIG00000013517	I
FOXN3	Pan troglodytes	ENSPTRG00000006614	I
ENSMPUG00000008174	Mustela putorius furo	ENSMPUG00000008174	I
ENSSHAG00000010850	Sarcophilus harrisii	ENSSHAG00000010850	I
FOXN3	Sus scrofa	ENSSSCG00000002429	I
ENSSTOG00000014643	Ictidomys tridecemlineatus	ENSSTOG00000014643	I
FOXN3	Tupaia belangeri	ENSTBEG00000003603	I
ENSTGUG00000012441	Taeniopygia guttata	ENSTGUG00000012441	I
FOXN3	Tursiops truncatus	ENSTTRG00000000817	I
ENSP00000261302	Macaca fascicularis	ENSP00000261302	I
foxn3	Xenopus tropicalis	XB-GENE-483117	I
ENSFALG00000012332	Ficedula albicollis	ENSFALG00000012332	I
ENSAMEG00000001627	Ailuropoda melanoleuca	ENSAMEG00000001627	I
ENSAPLG00000009060	Anas platyrhynchos	ENSAPLG00000009060	I
FOXN3	Canis familiaris	ENSCAFG00000011068	I
FOXN3	Callithrix jacchus	ENSCJAG00000017620	I
FOXN3	Cavia porcellus	ENSCPOG00000004079	I
FOXN3	Dasypus novemcinctus	ENSDNOG00000003188	I
ENSEEUG00000008958	Erinaceus europaeus	ENSEEUG00000008958	I
FOXN3	Anolis carolinensis	ENSACAG00000012791	I
FOXN3	Gallus gallus	ENSGALG00000010665	I
FOXN3	Gorilla gorilla	ENSGGOG00000023852	I
ENSLACG00000015298	Latimeria chalumnae	ENSLACG00000015298	I
FOXN3	Loxodonta africana	ENSLAFG00000016005	I
FOXN3	Meleagris gallopavo	ENSMGAG00000013026	I
FOXN3	Myotis lucifugus	ENSMLUG00000008780	I
FOXN3	Macaca mulatta	ENSMMUG00000019898	I
ENSCSAG00000009561	Chlorocebus sabaeus	ENSCSAG00000009561	N
ENSMMUP00000006991	Macaca fascicularis	ENSMMUP00000006991	N
ENSMMUG00000005289	Macaca mulatta	ENSMMUG00000005289	N

WRKY35 (Arabidopsis lyrata) WRKY

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1628 Related TFs

WRKY35 **(Arabidopsis lyrata)
WRKY**