VDBG_01336 (Verticillium alfalfae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 VDBG_01336 T387457_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU08527
M02627_2.00 		Neurospora crassa
NKYCGGCGNNN
NNNCGCCGRMN		 PBM
Weirauch et al.(2014)
pTH8938 		0.549 0.744
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EEY15227 Zinc cluster 13 53

Links

Other Zinc cluster family TFs
Other Verticillium alfalfae TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI3G48010 Brachypodium distachyon BRADI3G48010 N
F775_52298 Aegilops tauschii F775_52298 N
MLOC_59646 Hordeum vulgare MLOC_59646 N
ORUFI02G24540 Oryza rufipogon ORUFI02G24540 N
OS02G0602400 Oryza sativa OS02G0602400 N
Traes_6AL_6E02381E9 Triticum aestivum Traes_6AL_6E02381E9 N
Traes_6BL_7A1489BF0 Triticum aestivum Traes_6BL_7A1489BF0 N
TRIUR3_23107 Triticum urartu TRIUR3_23107 N