10288_YHR178W (Saccharomyces mikatae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 10288_YHR178W T390724_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
STB5
M00087_2.00 		Saccharomyces cerevisiae
NCGGNNHKWN
NWMDNNCCGN		 PBM
Badis et al.(2008)
STB5_4529 		0.683 1.000
STB5
M00923_2.00 		Saccharomyces cerevisiae
NCGGNNNHWN
NWDNNNCCGN		 PBM
Gordan et al.(2011)
Stb5 		0.683 1.000
STB5
M07514_2.00 		Saccharomyces cerevisiae
CGGNVHTA
TADBNCCG		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0392.1 		0.683 1.000
STB5
M08664_2.00 		Saccharomyces cerevisiae
CGGNVHKW
WMDBNCCG		 Misc
DeBoer et al.(2011)
YHR178W_1405 		0.683 1.000
STB5
M08665_2.00 		Saccharomyces cerevisiae
BCNGCGGN
NCCGCNGV		 Misc
DeBoer et al.(2011)
YHR178W_2068 		0.683 1.000
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
10288_YHR178W Zinc cluster 20 58

Links

Other Zinc cluster family TFs
Other Saccharomyces mikatae TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPRG_07044 Saprolegnia parasitica SPRG_07044 N
ALNC14_042760 Albugo laibachii ALNC14_042760 N
F443_07035 Phytophthora parasitica F443_07035 N
HpaG801991 Hyaloperonospora arabidopsidis HpaG801991 N
HpaG801992 Hyaloperonospora arabidopsidis HpaG801992 N
maker-par_contig_3801-snap-gene-0.1 Pythium arrhenomanes maker-par_contig_3801-snap-gene-0.1 N
maker-pir_contig_958-snap-gene-0.6 Pythium irregulare maker-pir_contig_958-snap-gene-0.6 N
maker-pve_contig_234-snap-gene-0.27 Pythium vexans maker-pve_contig_234-snap-gene-0.27 N
PITG_03547 Phytophthora infestans PITG_03547 N
estExt_fgenesh1_pg.C_6710006 Phytophthora capsici estExt_fgenesh1_pg.C_6710006 N