20556_YOR380W (Saccharomyces mikatae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00172 (Zn_clus) IPR001138 20556_YOR380W T390808_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RDR1
M00108_2.00 		Saccharomyces cerevisiae
DCGGRWN
NWYCCGH		 PBM
Badis et al.(2008)
RDR1_2112 		0.551 0.737
RDR1
M01597_2.00 		Saccharomyces cerevisiae
NCGGRWNN
NNWYCCGN		 PBM
Zhu et al.(2009)
Rdr1 		0.551 0.737
RDR1
M07535_2.00 		Saccharomyces cerevisiae
WGCGGAAN
NTTCCGCW		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0360.1 		0.551 0.737
RDR1
M08694_2.00 		Saccharomyces cerevisiae
WTCCGCGGAR
YTCCGCGGAW		 Misc
DeBoer et al.(2011)
YOR380W_756 		0.551 0.737
RDR1
M08695_2.00 		Saccharomyces cerevisiae
NNNNNNNNGCGGAWANNNNNB
VNNNNNTWTCCGCNNNNNNNN		 Misc
DeBoer et al.(2011)
YOR380W_843 		0.551 0.737
For this family, TFs with SR scores > 0.537 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
20556_YOR380W Zinc cluster 18 55

Links

Other Zinc cluster family TFs
Other Saccharomyces mikatae TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WUBG_18030 Wuchereria bancrofti WUBG_18030 N
PPA10152 Pristionchus pacificus PPA10152 N
ANCCEY_00716 Ancylostoma ceylanicum ANCCEY_00716 N
EVEC_0001057401 Enterobius vermicularis EVEC_0001057401 N
GPLIN_000551300 Globodera pallida GPLIN_000551300 N
L596_g27101 Steinernema carpocapsae L596_g27101 N
L889_g29219 Steinernema feltiae L889_g29219 N
L892_g19172 Steinernema scapterisci L892_g19172 N
L898_g32387 Steinernema monticolum L898_g32387 N
scaffold206-EXSNAP2012.6 Pristionchus exspectatus scaffold206-EXSNAP2012.6 N
TCNE_0001088301 Toxocara canis TCNE_0001088301 N