RDR1 (Saccharomyces cerevisiae)
Zinc cluster

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00172 (Zn_clus) IPR001138 YOR380W T388378_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables DNA-binding transcription factor activity. Involved in response to xenobiotic stimulus. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RDR1
M00108_2.00		 Saccharomyces cerevisiae
DCGGRWN
NWYCCGH		 PBM
Badis et al.(2008)
RDR1_2112		 (Direct) (Direct)
RDR1
M01597_2.00		 Saccharomyces cerevisiae
NCGGRWNN
NNWYCCGN		 PBM
Zhu et al.(2009)
Rdr1		 (Direct) (Direct)
RDR1
M07535_2.00		 Saccharomyces cerevisiae
WGCGGAAN
NTTCCGCW		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0360.1		 (Direct) (Direct)
RDR1
M08694_2.00		 Saccharomyces cerevisiae
WTCCGCGGAR
YTCCGCGGAW		 Misc
DeBoer et al.(2011)
YOR380W_756		 (Direct) (Direct)
RDR1
M08695_2.00		 Saccharomyces cerevisiae
NNNNNNNNGCGGAWANNNNNB
VNNNNNTWTCCGCNNNNNNNN		 Misc
DeBoer et al.(2011)
YOR380W_843		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.537 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00108_2.00 Zinc cluster 17 53
M01597_2.00 Zinc cluster 18 54

DNA Binding Domains

Protein ID Domain From To Sequence
YOR380W Zinc cluster 18 54

Links

Other Zinc cluster family TFs
Other Saccharomyces cerevisiae TFs

5 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
21658_YOR380W Saccharomyces paradoxus 21658_YOR380W I 0.660
24077_YOR380W Saccharomyces bayanus 24077_YOR380W I 0.595
SU7_3433 Saccharomyces arboricola SU7_3433 I 0.566
20556_YOR380W Saccharomyces mikatae 20556_YOR380W I 0.551
SKUD_203606 Saccharomyces kudriavzevii SKUD_203606 I 0.539