CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

AMTR_s00039p00088760 *(Amborella trichopoda)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF00847 (AP2)	IPR001471	AMTR_s00039p00088760	T000363_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
PK08602.1 M01098_2.00	Cannabis sativa	NYCACCGCYN	NRGCGGTGRN	PBM Lambert et al.(2019) pTH11421	0.694	0.780
DREB2D M01611_2.00	Arabidopsis thaliana	NNRCCGHNN	NNDCGGYNN	PBM Weirauch et al.(2014) pTH8108	0.693	0.780
DREB2D M06597_2.00	Arabidopsis thaliana	YHNYYDCCRCCGYYD	HRRCGGYGGHRRNDR	Dap-seq OMalley et al.(2016) At1g75490_col_a	0.693	0.780
DREB2D M06598_2.00	Arabidopsis thaliana	HNNHDYCACCGHYWN	NWRDCGGTGRHDNND	Dap-seq OMalley et al.(2016) At1g75490_colamp_a	0.693	0.780
DREB2F M06630_2.00	Arabidopsis thaliana	YCDCCRCCGCY	RGCGGYGGHGR	Dap-seq OMalley et al.(2016) AT3G57600_col_a	0.685	0.800
DREB2G M06662_2.00	Arabidopsis thaliana	DCCRCCGCYDYHDYH	DRHDRHRGCGGYGGH	Dap-seq OMalley et al.(2016) At5g18450_col_a	0.681	0.740
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
ERN15763	AP2	25	76	CAYRGVRQRTWGKWVAEIREPNKGDRLWLGTFATSEEAALAYDTASRKLYGT

Links
Other AP2 family TFs
Other *Amborella trichopoda* TFs