Bo00790s010 (Brassica oleracea)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bo00790s010 T000706_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.813 0.860
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.803 0.860
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.803 0.860
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.756 0.920
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.756 0.920
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.682 0.640
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo00790s010.1 AP2 108 159

Links

Other AP2 family TFs
Other Brassica oleracea TFs

448 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
A1O3_09080 Capronia epimyces A1O3_09080 I 0.000
AGABI2DRAFT_239429 Agaricus bisporus AGABI2DRAFT_239429 N 0.000
BN946_scf184920.g52 Trametes cinnabarina BN946_scf184920.g52 I 0.000
BOTBODRAFT_93074 Botryobasidium botryosum BOTBODRAFT_93074 N 0.000
CC1G_08635 Coprinopsis cinerea CC1G_08635 N 0.000
CERSUDRAFT_109986 Ceriporiopsis subvermispora CERSUDRAFT_109986 N 0.000
CY34DRAFT_809202 Suillus luteus CY34DRAFT_809202 N 0.000
DACRYDRAFT_24120 Dacryopinax sp DACRYDRAFT_24120 I 0.000
DICSQDRAFT_66188 Dichomitus squalens DICSQDRAFT_66188 I 0.000
fgenesh1_pg.C_scaffold_14000237 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_14000237 N 0.000
FIBRA_01656 Fibroporia radiculosa FIBRA_01656 I 0.000
FOMPIDRAFT_1017957 Fomitopsis pinicola FOMPIDRAFT_1017957 N 0.000
GALMADRAFT_217801 Galerina marginata GALMADRAFT_217801 N 0.000
GLOTRDRAFT_69493 Gloeophyllum trabeum GLOTRDRAFT_69493 I 0.000
GSTUM_00002563001 Tuber melanosporum GSTUM_00002563001 I 0.000
gw1.1.2337.1 Heterobasidion annosum gw1.1.2337.1 N 0.000
HETIRDRAFT_443323 Heterobasidion irregulare HETIRDRAFT_443323 N 0.000
HYDPIDRAFT_161884 Hydnomerulius pinastri HYDPIDRAFT_161884 N 0.000
JAAARDRAFT_60403 Jaapia argillacea JAAARDRAFT_60403 N 0.000
K443DRAFT_677716 Laccaria amethystina K443DRAFT_677716 N 0.000
LACBIDRAFT_242593 Laccaria bicolor LACBIDRAFT_242593 N 0.000
M378DRAFT_66555 Amanita muscaria M378DRAFT_66555 N 0.000
M404DRAFT_43642 Pisolithus tinctorius M404DRAFT_43642 N 0.000
M408DRAFT_34303 Serendipita vermifera M408DRAFT_34303 N 0.000
M413DRAFT_232462 Hebeloma cylindrosporum M413DRAFT_232462 N 0.000
M422DRAFT_84080 Sphaerobolus stellatus M422DRAFT_84080 N 0.000
Moror_376 Moniliophthora roreri Moror_376 I 0.000
MPER_01714 Moniliophthora perniciosa MPER_01714 I 0.000
MVLG_00287 Microbotryum violaceum MVLG_00287 N 0.000
PAXRUDRAFT_30646 Paxillus rubicundulus PAXRUDRAFT_30646 N 0.000
PHACADRAFT_246479 Phanerochaete carnosa PHACADRAFT_246479 N 0.000
PHLGIDRAFT_129508 Phlebiopsis gigantea PHLGIDRAFT_129508 N 0.000
PIIN_04121 Piriformospora indica PIIN_04121 N 0.000
PILCRDRAFT_818339 Piloderma croceum PILCRDRAFT_818339 N 0.000
PISMIDRAFT_69441 Pisolithus microcarpus PISMIDRAFT_69441 N 0.000
PISMIDRAFT_70573 Pisolithus microcarpus PISMIDRAFT_70573 N 0.000
PLEOSDRAFT_1111247 Pleurotus ostreatus PLEOSDRAFT_1111247 N 0.000
POSPLDRAFT_93814 Postia placenta POSPLDRAFT_93814 I 0.000
SCHCODRAFT_79748 Schizophyllum commune SCHCODRAFT_79748 N 0.000
SCLCIDRAFT_18203 Scleroderma citrinum SCLCIDRAFT_18203 N 0.000
SERLA73DRAFT_78019 Serpula lacrymans SERLA73DRAFT_78019 N 0.000
V565_015180 Rhizoctonia solani V565_015180 N 0.000
YALI0_F03388g Yarrowia lipolytica YALI0_F03388g I 0.000