Bra030919 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra030919 T001204_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
EREBP1
M09708_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$EREBP1_01 		0.734 0.850
RAP2-2
M00719_2.00 		Arabidopsis thaliana
NNRBYGNN
NNCRVYNN		 PBM
Chang et al.(2013)
pTH7227 		0.732 0.900
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.728 0.900
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.728 0.900
Q7Y1W2_TOBAC
M09735_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CEF1_01 		0.723 0.850
Q2TN80_WHEAT
M09715_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_02 		0.698 0.825
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra030919.1-P AP2 104 144

Links

Other AP2 family TFs
Other Brassica rapa TFs

254 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27585.m000144 Ricinus communis 27585.m000144 I 0.731
29726.m004094 Ricinus communis 29726.m004094 I 0.678
29986.m001656 Ricinus communis 29986.m001656 I 0.691
AMTR_s00003p00133970 Amborella trichopoda AMTR_s00003p00133970 I 0.687
AMTR_s00003p00135920 Amborella trichopoda AMTR_s00003p00135920 I 0.701
AMTR_s00129p00119770 Amborella trichopoda AMTR_s00129p00119770 I 0.700
Aquca_003_00658 Aquilegia coerulea Aquca_003_00658 I 0.683
Aquca_020_00575 Aquilegia coerulea Aquca_020_00575 I 0.732
Aquca_076_00008 Aquilegia coerulea Aquca_076_00008 I 0.695
BGIOSGA005480 Oryza indica BGIOSGA005480 I 0.734
BGIOSGA011328 Oryza indica BGIOSGA011328 I 0.696
BGIOSGA022463 Oryza indica BGIOSGA022463 I 0.734
BGIOSGA023903 Oryza indica BGIOSGA023903 I 0.702
BGIOSGA030816 Oryza indica BGIOSGA030816 I 0.716
Bo3g184310 Brassica oleracea Bo3g184310 I 0.729
Bo4g198690 Brassica oleracea Bo4g198690 I 0.682
Bo5g130490 Brassica oleracea Bo5g130490 I 0.732
Bostr.28625s0277 Boechera stricta Bostr.28625s0277 I 0.732
Bostr.7128s0090 Boechera stricta Bostr.7128s0090 I 0.728
Bra001541 Brassica rapa Bra001541 I 0.681
Bra021401 Brassica rapa Bra021401 I 0.682
Bra021543 Brassica rapa Bra021543 I 0.735
Bra027355 Brassica rapa Bra027355 I 0.732
BRADI1G46690 Brachypodium distachyon BRADI1G46690 I 0.706
BRADI3G60120 Brachypodium distachyon BRADI3G60120 I 0.736
BRADI4G31040 Brachypodium distachyon BRADI4G31040 I 0.716
Cagra.0769s0008 Capsella grandiflora Cagra.0769s0008 I 0.728
Cagra.1582s0005 Capsella grandiflora Cagra.1582s0005 I 0.735
Carubv10009538m.g Capsella rubella Carubv10009538m.g I 0.728
Carubv10013925m.g Capsella rubella Carubv10013925m.g I 0.735
cassava24734.valid.m1 Manihot esculenta cassava24734.valid.m1 I 0.691
cassava31609.valid.m1 Manihot esculenta cassava31609.valid.m1 I 0.731
cassava31610.valid.m1 Manihot esculenta cassava31610.valid.m1 I 0.731
cassava37155.valid.m1 Manihot esculenta cassava37155.valid.m1 I 0.679
cassava42230.valid.m1 Manihot esculenta cassava42230.valid.m1 I 0.723
cassava42231.valid.m1 Manihot esculenta cassava42231.valid.m1 I 0.723
cassava43050.valid.m1 Manihot esculenta cassava43050.valid.m1 I 0.678
Ca_03481 Cicer arietinum Ca_03481 I 0.691
Ca_03482 Cicer arietinum Ca_03482 I 0.691
Ca_14758 Cicer arietinum Ca_14758 I 0.692
Ca_16180 Cicer arietinum Ca_16180 I 0.731
CHLREDRAFT_205919 Chlamydomonas reinhardtii CHLREDRAFT_205919 I 0.677
chr1.CM0442.200.nd Lotus japonicus chr1.CM0442.200.nd I 0.681
Ciclev10005701m.g Citrus clementina Ciclev10005701m.g I 0.681
Ciclev10021059m.g Citrus clementina Ciclev10021059m.g I 0.691
Ciclev10025816m.g Citrus clementina Ciclev10025816m.g I 0.723
Cla009438 Citrullus lanatus Cla009438 I 0.688
Cla012751 Citrullus lanatus Cla012751 I 0.731
Cla015763 Citrullus lanatus Cla015763 I 0.731
Cla017662 Citrullus lanatus Cla017662 I 0.691
Cucsa.069280 Cucumis sativus Cucsa.069280 I 0.685
Cucsa.096930 Cucumis sativus Cucsa.096930 I 0.691
Cucsa.149280 Cucumis sativus Cucsa.149280 I 0.732
Cucsa.252810 Cucumis sativus Cucsa.252810 I 0.682
Cucsa.359880 Cucumis sativus Cucsa.359880 I 0.731
EREBP1 Oryza sativa OS02G0782700 D 0.734
estExt_fgenesh1_pg.C_170126 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_170126 I 0.693
estExt_fgenesh1_pg.C_Chr_04.00010339 Ostreococcus tauri estExt_fgenesh1_pg.C_Chr_04.00010339 I 0.706
Eucgr.H01085 Eucalyptus grandis Eucgr.H01085 I 0.691
Eucgr.H03965 Eucalyptus grandis Eucgr.H03965 I 0.681
Eucgr.I02155 Eucalyptus grandis Eucgr.I02155 I 0.731
EuGene.1100010301 Micromonas sp RCC299 EuGene.1100010301 I 0.681
evm.TU.supercontig_151.30 Carica papaya evm.TU.supercontig_151.30 I 0.683
evm.TU.supercontig_2304.1 Carica papaya evm.TU.supercontig_2304.1 I 0.687
evm.TU.supercontig_481.1 Carica papaya evm.TU.supercontig_481.1 I 0.731
F775_07667 Aegilops tauschii F775_07667 I 0.719
F775_15852 Aegilops tauschii F775_15852 I 0.718
F775_25662 Aegilops tauschii F775_25662 I 0.721
F775_27248 Aegilops tauschii F775_27248 I 0.697
F775_30714 Aegilops tauschii F775_30714 I 0.716
F775_31907 Aegilops tauschii F775_31907 I 0.709
fgenesh1_pm.chr_4_#_35 Ostreococcus RCC809 fgenesh1_pm.chr_4_#_35 I 0.706
gene05448-v1.0-hybrid Fragaria vesca gene05448-v1.0-hybrid I 0.731
gene07057-v1.0-hybrid Fragaria vesca gene07057-v1.0-hybrid I 0.682
gene11086-v1.0-hybrid Fragaria vesca gene11086-v1.0-hybrid I 0.691
GG.C169_S17_00183 Chlorella vulgaris GG.C169_S17_00183 I 0.693
GLYMA02G01960 Glycine max GLYMA02G01960 I 0.691
GLYMA03G42450 Glycine max GLYMA03G42450 I 0.731
GLYMA07G04950 Glycine max GLYMA07G04950 I 0.731
GLYMA07G37410 Glycine max GLYMA07G37410 I 0.686
GLYMA10G02080 Glycine max GLYMA10G02080 I 0.691
GLYMA15G16260 Glycine max GLYMA15G16260 I 0.679
GLYMA16G01500 Glycine max GLYMA16G01500 I 0.731
GLYMA19G40070 Glycine max GLYMA19G40070 I 0.691
GLYMA19G45200 Glycine max GLYMA19G45200 I 0.731
Gorai.004G051600 Gossypium raimondii Gorai.004G051600 I 0.691
Gorai.004G142800 Gossypium raimondii Gorai.004G142800 I 0.691
Gorai.006G260300 Gossypium raimondii Gorai.006G260300 I 0.677
Gorai.009G147300 Gossypium raimondii Gorai.009G147300 I 0.725
Gorai.010G236100 Gossypium raimondii Gorai.010G236100 I 0.708
Gorai.011G056300 Gossypium raimondii Gorai.011G056300 I 0.731
Gorai.011G193600 Gossypium raimondii Gorai.011G193600 I 0.678
GRMZM2G018398 Zea mays GRMZM2G018398 I 0.727
GRMZM2G018984 Zea mays GRMZM2G018984 I 0.678
GRMZM2G052667 Zea mays GRMZM2G052667 I 0.723
GRMZM2G110333 Zea mays GRMZM2G110333 I 0.705
GRMZM2G148333 Zea mays GRMZM2G148333 I 0.695
GRMZM2G171179 Zea mays GRMZM2G171179 I 0.706
GSMUA_Achr2G07300_001 Musa acuminata GSMUA_Achr2G07300_001 I 0.727
GSMUA_Achr3G05800_001 Musa acuminata GSMUA_Achr3G05800_001 I 0.723
GSMUA_Achr3G10140_001 Musa acuminata GSMUA_Achr3G10140_001 I 0.731
GSMUA_Achr5G24060_001 Musa acuminata GSMUA_Achr5G24060_001 I 0.707
GSMUA_Achr6G10870_001 Musa acuminata GSMUA_Achr6G10870_001 I 0.730
GSMUA_Achr8G23730_001 Musa acuminata GSMUA_Achr8G23730_001 I 0.722
GSMUA_Achr8G33590_001 Musa acuminata GSMUA_Achr8G33590_001 I 0.689
GSMUA_Achr9G18090_001 Musa acuminata GSMUA_Achr9G18090_001 I 0.731
GSMUA_AchrUn_randomG09790_001 Musa acuminata GSMUA_AchrUn_randomG09790_001 I 0.691
GSMUA_AchrUn_randomG19380_001 Musa acuminata GSMUA_AchrUn_randomG19380_001 I 0.694
GSMUA_AchrUn_randomG27100_001 Musa acuminata GSMUA_AchrUn_randomG27100_001 I 0.691
HRE2 Vitis vinifera VIT_07s0005g00820 I 0.683
LjSGA_141699.1 Lotus japonicus LjSGA_141699.1 I 0.681
LjT01F24.60.nd Lotus japonicus LjT01F24.60.nd I 0.681
LPERR02G28780 Leersia perrieri LPERR02G28780 I 0.734
LPERR03G05400 Leersia perrieri LPERR03G05400 I 0.696
LPERR06G05580 Leersia perrieri LPERR06G05580 I 0.734
LPERR07G19320 Leersia perrieri LPERR07G19320 I 0.691
LPERR09G08060 Leersia perrieri LPERR09G08060 I 0.716
Lus10013186.g Linum usitatissimum Lus10013186.g I 0.731
Lus10016827.g Linum usitatissimum Lus10016827.g I 0.681
Lus10037448.g Linum usitatissimum Lus10037448.g I 0.731
MDP0000288465 Malus domestica MDP0000288465 I 0.691
MDP0000308922 Malus domestica MDP0000308922 I 0.731
MDP0000403580 Malus domestica MDP0000403580 I 0.731
mgf005222m Mimulus guttatus mgf005222m I 0.700
mgf009667m Mimulus guttatus mgf009667m I 0.719
mgf010035m Mimulus guttatus mgf010035m I 0.719
mgf014502m Mimulus guttatus mgf014502m I 0.683
MLOC_10017 Hordeum vulgare MLOC_10017 I 0.718
MLOC_18529 Hordeum vulgare MLOC_18529 I 0.697
MLOC_38561 Hordeum vulgare MLOC_38561 I 0.716
MLOC_58276 Hordeum vulgare MLOC_58276 I 0.692
MLOC_59004 Hordeum vulgare MLOC_59004 I 0.692
MLOC_69925 Hordeum vulgare MLOC_69925 I 0.718
MLOC_77669 Hordeum vulgare MLOC_77669 I 0.703
MLOC_78827 Hordeum vulgare MLOC_78827 I 0.703
MTR_1g087920 Medicago truncatula MTR_1g087920 I 0.691
MTR_2g105380 Medicago truncatula MTR_2g105380 I 0.731
MTR_2g435590 Medicago truncatula MTR_2g435590 I 0.683
MTR_8g022820 Medicago truncatula MTR_8g022820 I 0.732
OB02G41790 Oryza brachyantha OB02G41790 I 0.734
OB06G15590 Oryza brachyantha OB06G15590 I 0.734
OB07G27820 Oryza brachyantha OB07G27820 I 0.695
OB08G28690 Oryza brachyantha OB08G28690 I 0.677
OB09G17960 Oryza brachyantha OB09G17960 I 0.716
OBART02G34990 Oryza barthii OBART02G34990 I 0.734
OBART03G06060 Oryza barthii OBART03G06060 I 0.696
OBART06G06020 Oryza barthii OBART06G06020 I 0.734
OBART07G22260 Oryza barthii OBART07G22260 I 0.702
OBART09G11390 Oryza barthii OBART09G11390 I 0.716
OGLUM02G36100 Oryza glumaepatula OGLUM02G36100 I 0.734
OGLUM03G06060 Oryza glumaepatula OGLUM03G06060 I 0.696
OGLUM06G06300 Oryza glumaepatula OGLUM06G06300 I 0.734
OGLUM07G22170 Oryza glumaepatula OGLUM07G22170 I 0.702
OGLUM09G11780 Oryza glumaepatula OGLUM09G11780 I 0.716
OLONG_007389 Oryza longistaminata OLONG_007389 I 0.716
OLONG_008836 Oryza longistaminata OLONG_008836 I 0.734
OLONG_013314 Oryza longistaminata OLONG_013314 I 0.734
OMERI02G32980 Oryza meridionalis OMERI02G32980 I 0.734
OMERI03G05890 Oryza meridionalis OMERI03G05890 I 0.696
OMERI06G07210 Oryza meridionalis OMERI06G07210 I 0.734
OMERI07G18590 Oryza meridionalis OMERI07G18590 I 0.702
OMERI09G08870 Oryza meridionalis OMERI09G08870 I 0.716
ONIVA02G37060 Oryza nivara ONIVA02G37060 I 0.734
ONIVA03G06080 Oryza nivara ONIVA03G06080 I 0.696
ONIVA06G06990 Oryza nivara ONIVA06G06990 I 0.727
ONIVA07G20780 Oryza nivara ONIVA07G20780 I 0.702
ONIVA09G11170 Oryza nivara ONIVA09G11170 I 0.716
OPUNC02G32270 Oryza punctata OPUNC02G32270 I 0.734
OPUNC06G05780 Oryza punctata OPUNC06G05780 I 0.734
OPUNC07G20890 Oryza punctata OPUNC07G20890 I 0.702
OPUNC09G09870 Oryza punctata OPUNC09G09870 I 0.716
orange1.1g019887m.g Citrus sinensis orange1.1g019887m.g I 0.691
orange1.1g020391m.g Citrus sinensis orange1.1g020391m.g I 0.723
orange1.1g025382m.g Citrus sinensis orange1.1g025382m.g I 0.681
ORGLA02G0302700 Oryza glaberrima ORGLA02G0302700 I 0.734
ORGLA03G0058500 Oryza glaberrima ORGLA03G0058500 I 0.696
ORGLA07G0171300 Oryza glaberrima ORGLA07G0171300 I 0.702
ORGLA09G0085500 Oryza glaberrima ORGLA09G0085500 I 0.716
ORUFI02G36450 Oryza rufipogon ORUFI02G36450 I 0.734
ORUFI03G05890 Oryza rufipogon ORUFI03G05890 I 0.696
ORUFI06G06250 Oryza rufipogon ORUFI06G06250 I 0.734
ORUFI07G23290 Oryza rufipogon ORUFI07G23290 I 0.702
ORUFI09G12180 Oryza rufipogon ORUFI09G12180 I 0.716
OS03G0183000 Oryza sativa OS03G0183000 I 0.696
OS06G0194000 Oryza sativa OS06G0194000 I 0.734
OS07G0617000 Oryza sativa OS07G0617000 I 0.702
OS09G0434500 Oryza sativa OS09G0434500 I 0.716
OSTLU_9237 Ostreococcus lucimarinus OSTLU_9237 I 0.706
Pavir.Aa00281 Panicum virgatum Pavir.Aa00281 I 0.727
Pavir.Bb02257 Panicum virgatum Pavir.Bb02257 I 0.716
Pavir.J01991 Panicum virgatum Pavir.J01991 I 0.716
Pavir.J04875 Panicum virgatum Pavir.J04875 I 0.727
PDK_20s1440861g004 Phoenix dactylifera PDK_20s1440861g004 I 0.715
PGSC0003DMG400004898 Solanum tuberosum PGSC0003DMG400004898 I 0.726
PGSC0003DMG400009142 Solanum tuberosum PGSC0003DMG400009142 I 0.712
PGSC0003DMG400028853 Solanum tuberosum PGSC0003DMG400028853 I 0.696
PGSC0003DMG400031795 Solanum tuberosum PGSC0003DMG400031795 I 0.691
PK12109.1 Cannabis sativa PK12109.1 I 0.691
PK15234.1 Cannabis sativa PK15234.1 I 0.735
Pm008236 Prunus mume Pm008236 I 0.689
Pm013172 Prunus mume Pm013172 I 0.724
Pm020059 Prunus mume Pm020059 I 0.678
POPTR_0001s16400 Populus trichocarpa POPTR_0001s16400 I 0.731
POPTR_0002s20270 Populus trichocarpa POPTR_0002s20270 I 0.678
POPTR_0003s06930 Populus trichocarpa POPTR_0003s06930 I 0.724
POPTR_0014s12090 Populus trichocarpa POPTR_0014s12090 I 0.691
PRUPE_ppa006366mg Prunus persica PRUPE_ppa006366mg I 0.724
PRUPE_ppa008563mg Prunus persica PRUPE_ppa008563mg I 0.689
PRUPE_ppa008730mg Prunus persica PRUPE_ppa008730mg I 0.691
Q2TN80_WHEAT Triticum aestivum Q2TN80_WHEAT D 0.698
Q6TXK7_SOLLC Solanum lycopersicum Q6TXK7_SOLLC I 0.716
Q7Y1W2_TOBAC Nicotiana tabacum Q7Y1W2_TOBAC D 0.723
Q84XB2_SOLLC Solanum lycopersicum Q84XB2_SOLLC I 0.691
RAP2-12 Arabidopsis thaliana AT1G53910 D 0.728
RAP2-2 Arabidopsis thaliana AT3G14230 D 0.732
RAP2.12 Arabidopsis lyrata scaffold_105235.1 I 0.728
RAP2.2 Arabidopsis lyrata scaffold_301660.1 I 0.732
RAP2.3 Vitis vinifera VIT_05s0077g01860 I 0.681
SapurV1A.0052s0250 Salix purpurea SapurV1A.0052s0250 I 0.691
SapurV1A.0264s0250 Salix purpurea SapurV1A.0264s0250 I 0.677
SapurV1A.0494s0080 Salix purpurea SapurV1A.0494s0080 I 0.678
SapurV1A.1115s0040 Salix purpurea SapurV1A.1115s0040 I 0.722
SapurV1A.1700s0030 Salix purpurea SapurV1A.1700s0030 I 0.731
Sb02g025530 Sorghum bicolor Sb02g025530 I 0.716
Sb04g035160 Sorghum bicolor Sb04g035160 I 0.698
Sb10g006260 Sorghum bicolor Sb10g006260 I 0.706
Si006802m.g Setaria italica Si006802m.g I 0.697
Si017568m.g Setaria italica Si017568m.g I 0.727
Si030088m.g Setaria italica Si030088m.g I 0.716
Si030514m.g Setaria italica Si030514m.g I 0.686
Si033388m.g Setaria italica Si033388m.g I 0.695
Solyc03g123500.2 Solanum lycopersicum Solyc03g123500.2 I 0.716
Solyc06g063070.2 Solanum lycopersicum Solyc06g063070.2 I 0.734
Solyc09g075420.2 Solanum lycopersicum Solyc09g075420.2 I 0.691
Solyc12g049560.1 Solanum lycopersicum Solyc12g049560.1 I 0.696
TCM_004710 Theobroma cacao TCM_004710 I 0.683
TCM_004717 Theobroma cacao TCM_004717 I 0.691
TCM_021264 Theobroma cacao TCM_021264 I 0.681
TCM_029232 Theobroma cacao TCM_029232 I 0.731
Thhalv10011606m.g Eutrema salsugineum Thhalv10011606m.g I 0.728
Thhalv10020945m.g Eutrema salsugineum Thhalv10020945m.g I 0.732
Traes_5AL_14D9A9844 Triticum aestivum Traes_5AL_14D9A9844 I 0.716
Traes_5BL_7F84602F3 Triticum aestivum Traes_5BL_7F84602F3 I 0.716
Traes_5DL_26F3B188A Triticum aestivum Traes_5DL_26F3B188A I 0.716
Traes_6AL_DAA2D7F8A Triticum aestivum Traes_6AL_DAA2D7F8A I 0.709
Traes_6AS_A9D28899F Triticum aestivum Traes_6AS_A9D28899F I 0.721
Traes_6BL_6AEADC565 Triticum aestivum Traes_6BL_6AEADC565 I 0.709
Traes_6BS_2291F7F98 Triticum aestivum Traes_6BS_2291F7F98 I 0.696
Traes_6DL_DD82BD107 Triticum aestivum Traes_6DL_DD82BD107 I 0.709
Traes_7DS_3570A0055 Triticum aestivum Traes_7DS_3570A0055 I 0.697
TRIUR3_08978 Triticum urartu TRIUR3_08978 I 0.709
TRIUR3_20682 Triticum urartu TRIUR3_20682 I 0.716
TRIUR3_28474 Triticum urartu TRIUR3_28474 I 0.697
VIT_09s0002g00470 Vitis vinifera VIT_09s0002g00470 I 0.731