CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G084264
(
Zea mays
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00847 (AP2)
IPR001471
GRMZM2G084264
T002140_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF014
M06581_2.00
Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR
Dap-seq
OMalley et al.(2016)
AT1G44830_col_a
0.735
0.840
ERF012
M06570_2.00
Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN
Dap-seq
OMalley et al.(2016)
DREB26_col_a
0.721
0.800
ERF013
M06601_2.00
Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH
Dap-seq
OMalley et al.(2016)
At1g77640_col_a
0.702
0.800
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G084264_P01
AP2
19
70
RTYKGVRMRSWGSWVSEVRAPGQKTRIWLGSHATAEAAARAHDAALLCLRGS
Links
Other
AP2
family TFs
Other
Zea mays
TFs
122 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava9078.m1
Manihot esculenta
cassava9078.m1
I
Ca_21127
Cicer arietinum
Ca_21127
I
F775_12121
Aegilops tauschii
F775_12121
N
OPUNC01G35700
Oryza punctata
OPUNC01G35700
N
PDK_20s1314361g001
Phoenix dactylifera
PDK_20s1314361g001
N
SELMODRAFT_75978
Selaginella moellendorffii
SELMODRAFT_75978
I
Traes_1BL_C25B5DDB4
Triticum aestivum
Traes_1BL_C25B5DDB4
I
Traes_1DL_B26A733D4
Triticum aestivum
Traes_1DL_B26A733D4
I
TRIUR3_29290
Triticum urartu
TRIUR3_29290
I
TRIUR3_33469
Triticum urartu
TRIUR3_33469
N