Solyc08g007820.1 (Solanum lycopersicum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Solyc08g007820.1 T005497_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.739 0.780
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.739 0.780
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.739 0.780
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.739 0.780
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.739 0.780
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.739 0.780
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.731 0.780
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.731 0.780
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.731 0.780
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.731 0.780
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.711 0.740
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.702 0.740
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.702 0.740
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.701 0.760
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.701 0.760
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.695 0.760
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.695 0.760
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.695 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc08g007820.1.1 AP2 49 100

Links

Other AP2 family TFs
Other Solanum lycopersicum TFs

152 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL010557 Aedes aegypti AAEL010557 N 0.000
AALB006632 Anopheles albimanus AALB006632 N 0.000
AARA001098 Anopheles arabiensis AARA001098 N 0.000
ACOM036058 Anopheles coluzzii ACOM036058 N 0.000
ACUA009415 Anopheles culicifacies ACUA009415 N 0.000
ADIR000986 Anopheles dirus ADIR000986 N 0.000
AEPI007593 Anopheles epiroticus AEPI007593 N 0.000
AFUN011561 Anopheles funestus AFUN011561 N 0.000
AGAP013406 Anopheles gambiae AGAP013406 N 0.000
AMAM003662 Anopheles maculatus AMAM003662 N 0.000
AMEC004233 Anopheles melas AMEC004233 N 0.000
AMEM007871 Anopheles merus AMEM007871 N 0.000
AMIN002143 Anopheles minimus AMIN002143 N 0.000
AQUA008325 Anopheles quadriannulatus AQUA008325 N 0.000
ASIS007000 Anopheles sinensis ASIS007000 N 0.000
ASTEI06217 Anopheles stephensi ASTEI06217 N 0.000
CPIJ011242 Culex quinquefasciatus CPIJ011242 N 0.000
CPIJ015080 Culex quinquefasciatus CPIJ015080 N 0.000
CpipJ_CPIJ011242 Culex pipiens CpipJ_CPIJ011242 N 0.000
CpipJ_CPIJ015080 Culex pipiens CpipJ_CPIJ015080 N 0.000
DAPPUDRAFT_227979 Daphnia pulex DAPPUDRAFT_227979 N 0.000
ENSMODG00000027678 Monodelphis domestica ENSMODG00000027678 N 0.000
ENSSHAG00000016082 Sarcophilus harrisii ENSSHAG00000016082 N 0.000
L798_09207 Zootermopsis nevadensis L798_09207 N 0.000
LotgiG174714 Lottia gigantea LotgiG174714 N 0.000
Sakowv30001353m.g Saccoglossus kowalevskii Sakowv30001353m.g N 0.000
SMAR009752 Strigamia maritima SMAR009752 N 0.000
SPU_016650 Strongylocentrotus purpuratus SPU_016650 N 0.000