CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Cucsa.302750 *(Cucumis sativus)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Cucsa.302750	T007086_2.00	JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
DREB1D M06678_2.00	Arabidopsis thaliana	NHBRCCGACRTNN	NNAYGTCGGYVDN	Dap-seq OMalley et al.(2016) CBF4_col_a	0.789	0.840
DREB1D M06679_2.00	Arabidopsis thaliana	HYRCCGACATND	HNATGTCGGYRD	Dap-seq OMalley et al.(2016) CBF4_colamp_a	0.789	0.840
DREB1C M01623_2.00	Arabidopsis thaliana	RCCGACAT	ATGTCGGY	PBM Weirauch et al.(2014) pTH8187	0.764	0.840
DREB1C M06639_2.00	Arabidopsis thaliana	NNNHBRCCGACATNN	NNATGTCGGYVDNNN	Dap-seq OMalley et al.(2016) CBF2_col_a	0.764	0.840
DREB1C M06640_2.00	Arabidopsis thaliana	NYBRCCGACATVN	NBATGTCGGYVRN	Dap-seq OMalley et al.(2016) CBF2_colamp_a	0.764	0.840
DREB1A M01624_2.00	Arabidopsis thaliana	NRCCGACNNN	NNNGTCGGYN	PBM Weirauch et al.(2014) pTH8163	0.742	0.820
DREB1A M01625_2.00	Arabidopsis thaliana	NNRCCGACNW	WNGTCGGYNN	PBM Weirauch et al.(2014) pTH9718	0.742	0.820
DREB1A M06641_2.00	Arabidopsis thaliana	HNYBRCCGACDWNN	NNWHGTCGGYVRND	Dap-seq OMalley et al.(2016) CBF3_col_a	0.742	0.820
DREB1A M06642_2.00	Arabidopsis thaliana	YBRCCGACATN	NATGTCGGYVR	Dap-seq OMalley et al.(2016) CBF3_colamp_a	0.742	0.820
DREB1F M00962_2.00	Arabidopsis thaliana	NRCCGACNN	NNGTCGGYN	PBM LehtiShiu et al.(2015) DDF1_Arabidopsis_thaliana	0.714	0.760
DREB1F M00840_2.00	Arabidopsis thaliana	NRYCGACNN	NNGTCGRYN	PBM Franco-Zorrilla et al.(2014) DDF1	0.714	0.760
DDF1 M00964_2.00	Arabidopsis lyrata	NRYCGACDY	RHGTCGRYN	PBM LehtiShiu et al.(2015) DDF1_Arabidopsis_lyrata	0.714	0.760
DREB1F M06564_2.00	Arabidopsis thaliana	NHNHYGYCGACATNN	NNATGTCGRCRDNDN	Dap-seq OMalley et al.(2016) DDF1_col_a	0.714	0.760
DREB1F M06565_2.00	Arabidopsis thaliana	HNDNNRYCGACAH	DTGTCGRYNNHND	Dap-seq OMalley et al.(2016) DDF1_colamp_a	0.714	0.760
DREB1F M09701_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREB1F_03	0.714	0.760
DREB1G M01635_2.00	Oryza sativa	NYGCCGACAN	NTGTCGGCRN	PBM Weirauch et al.(2014) pTH8352	0.688	0.720
DREB1G M09707_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$DREB1G_01	0.688	0.720
ddf2 M00965_2.00	Arabidopsis lyrata	NRYCGACAT	ATGTCGRYN	PBM LehtiShiu et al.(2015) DDF2_Arabidopsis_lyrata	0.686	0.720
DREB1B M06643_2.00	Arabidopsis thaliana	DHBRCCGACRHN	NDYGTCGGYVDH	Dap-seq OMalley et al.(2016) CBF1_col_a	0.679	0.820
DREB1B M06644_2.00	Arabidopsis thaliana	NNNHBRCCGACAWNN	NNWTGTCGGYVDNNN	Dap-seq OMalley et al.(2016) CBF1_colamp_a	0.679	0.820
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cucsa.302750.1	AP2	49	100	PVYRGVRQRNNDKWVCELREPNKKTRIWLGTYPTAEMAARAHDIAALALRGK

Links
Other AP2 family TFs
Other *Cucumis sativus* TFs

192 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
BGIOSGA024253	Oryza indica	BGIOSGA024253	I
Gorai.003G003200	Gossypium raimondii	Gorai.003G003200	N
GSMUA_Achr2G03070_001	Musa acuminata	GSMUA_Achr2G03070_001	I
OBART07G15570	Oryza barthii	OBART07G15570	I
OGLUM07G15250	Oryza glumaepatula	OGLUM07G15250	I
OMERI07G12270	Oryza meridionalis	OMERI07G12270	I
ONIVA07G14170	Oryza nivara	ONIVA07G14170	I
ORUFI07G16070	Oryza rufipogon	ORUFI07G16070	I
Pavir.Bb02759	Panicum virgatum	Pavir.Bb02759	N
PGSC0003DMG401029709	Solanum tuberosum	PGSC0003DMG401029709	I
Si032170m.g	Setaria italica	Si032170m.g	I

Cucsa.302750 (Cucumis sativus) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

192 Related TFs

Cucsa.302750 **(Cucumis sativus)
AP2**