Carubv10009949m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10009949m.g T007847_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.857 0.980
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.857 0.980
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.854 0.980
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.711 0.860
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.711 0.860
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.693 0.840
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.693 0.840
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.683 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009949m AP2 91 142

Links

Other AP2 family TFs
Other Capsella rubella TFs

457 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Traes_1AS_C7D489C03 Triticum aestivum Traes_1AS_C7D489C03 N 0.000
Traes_1BL_9BF41B805 Triticum aestivum Traes_1BL_9BF41B805 N 0.000
Traes_1BS_649624FE9 Triticum aestivum Traes_1BS_649624FE9 N 0.000
Traes_1BS_FBCD9C4B1 Triticum aestivum Traes_1BS_FBCD9C4B1 N 0.000
Traes_1DL_58BEEDC49 Triticum aestivum Traes_1DL_58BEEDC49 N 0.000
Traes_1DL_C0569EACC Triticum aestivum Traes_1DL_C0569EACC N 0.000
Traes_1DS_E5423261A Triticum aestivum Traes_1DS_E5423261A N 0.000
Traes_2AL_0220C7C41 Triticum aestivum Traes_2AL_0220C7C41 N 0.000
Traes_2AS_12294E9D5 Triticum aestivum Traes_2AS_12294E9D5 N 0.000
Traes_2AS_16D1CC46E Triticum aestivum Traes_2AS_16D1CC46E N 0.000
Traes_2AS_5B8CF4BA2 Triticum aestivum Traes_2AS_5B8CF4BA2 N 0.000
Traes_2BL_1506D0FD2 Triticum aestivum Traes_2BL_1506D0FD2 N 0.000
Traes_2DL_7DFB74CDE Triticum aestivum Traes_2DL_7DFB74CDE N 0.000
Traes_2DL_F37E51175 Triticum aestivum Traes_2DL_F37E51175 N 0.000
Traes_3AS_465421436 Triticum aestivum Traes_3AS_465421436 N 0.000
Traes_3AS_9B4FF6282 Triticum aestivum Traes_3AS_9B4FF6282 N 0.000
Traes_3DL_3ECFD7555 Triticum aestivum Traes_3DL_3ECFD7555 N 0.000
Traes_3DL_7B0E46392 Triticum aestivum Traes_3DL_7B0E46392 N 0.000
Traes_3DS_2D5A1C423 Triticum aestivum Traes_3DS_2D5A1C423 N 0.000
Traes_3DS_AB726A97D Triticum aestivum Traes_3DS_AB726A97D N 0.000
Traes_4AL_9018B5132 Triticum aestivum Traes_4AL_9018B5132 N 0.000
Traes_4AS_551523088 Triticum aestivum Traes_4AS_551523088 N 0.000
Traes_4AS_AA492B6A9 Triticum aestivum Traes_4AS_AA492B6A9 N 0.000
Traes_4BL_00160D0BD Triticum aestivum Traes_4BL_00160D0BD N 0.000
Traes_4BL_0437CF0AD Triticum aestivum Traes_4BL_0437CF0AD N 0.000
Traes_4BL_0437CF0AD1 Triticum aestivum Traes_4BL_0437CF0AD1 N 0.000
Traes_5AL_69C653611 Triticum aestivum Traes_5AL_69C653611 N 0.000
Traes_5AL_9775A72F6 Triticum aestivum Traes_5AL_9775A72F6 N 0.000
Traes_5BL_FC8AB1380 Triticum aestivum Traes_5BL_FC8AB1380 N 0.000
Traes_5BS_48110DBF6 Triticum aestivum Traes_5BS_48110DBF6 N 0.000
Traes_5BS_E5423261A Triticum aestivum Traes_5BS_E5423261A N 0.000
Traes_6AL_B082ABBFC Triticum aestivum Traes_6AL_B082ABBFC N 0.000
Traes_6AL_F23B20CBD Triticum aestivum Traes_6AL_F23B20CBD N 0.000
Traes_6AS_6D2F550E3 Triticum aestivum Traes_6AS_6D2F550E3 N 0.000
Traes_6AS_895EC9E40 Triticum aestivum Traes_6AS_895EC9E40 N 0.000
Traes_6BL_7BF2DD21E Triticum aestivum Traes_6BL_7BF2DD21E N 0.000
Traes_6BS_0A7B95279 Triticum aestivum Traes_6BS_0A7B95279 N 0.000
Traes_6DL_E5423261A Triticum aestivum Traes_6DL_E5423261A N 0.000
Traes_6DS_10411A1DC Triticum aestivum Traes_6DS_10411A1DC N 0.000
Traes_6DS_2BF4B191B Triticum aestivum Traes_6DS_2BF4B191B N 0.000
Traes_6DS_31C9B430A Triticum aestivum Traes_6DS_31C9B430A N 0.000
Traes_6DS_31C9B430A1 Triticum aestivum Traes_6DS_31C9B430A1 N 0.000
Traes_6DS_6A0696911 Triticum aestivum Traes_6DS_6A0696911 N 0.000
Traes_6DS_D1DD7A4C2 Triticum aestivum Traes_6DS_D1DD7A4C2 N 0.000
Traes_7AL_5585F9BD1 Triticum aestivum Traes_7AL_5585F9BD1 N 0.000
Traes_7AS_0437CF0AD Triticum aestivum Traes_7AS_0437CF0AD N 0.000
Traes_7AS_6EE1182D4 Triticum aestivum Traes_7AS_6EE1182D4 N 0.000
Traes_7AS_6EE1182D41 Triticum aestivum Traes_7AS_6EE1182D41 N 0.000
Traes_7AS_6EE1182D42 Triticum aestivum Traes_7AS_6EE1182D42 N 0.000
Traes_7BL_65B9384BF Triticum aestivum Traes_7BL_65B9384BF N 0.000
Traes_7BL_9884A6FA5 Triticum aestivum Traes_7BL_9884A6FA5 N 0.000
Traes_7DL_E5423261A Triticum aestivum Traes_7DL_E5423261A N 0.000
Traes_7DL_E5423261A1 Triticum aestivum Traes_7DL_E5423261A1 N 0.000
Traes_7DL_E5423261A2 Triticum aestivum Traes_7DL_E5423261A2 N 0.000
Traes_7DS_6354FF359 Triticum aestivum Traes_7DS_6354FF359 N 0.000