CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

evm.TU.supercontig_89.42 *(Carica papaya)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	evm.TU.supercontig_89.42	T008334_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF5_TOBAC M09729_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF4_02	0.869	0.922
ERF5 M00721_2.00	Arabidopsis thaliana	NNNGSMRNMN	NKNYKSCNNN	PBM Chang et al.(2013) pTH7197	0.862	0.882
ERF5 M06674_2.00	Arabidopsis thaliana	YCDYCKCCGCCGYCD	HGRCGGCGGMGRHGR	Dap-seq OMalley et al.(2016) ERF5_col_a	0.862	0.882
ERF5 M06675_2.00	Arabidopsis thaliana	NHDBCGCCGCCRYHDNHDNNN	NNNHDNHDRYGGCGGCGVHDN	Dap-seq OMalley et al.(2016) ERF5_colamp_a	0.862	0.882
PK02330.1 M01095_2.00	Cannabis sativa	NNNGCCGBCN	NGVCGGCNNN	PBM Lambert et al.(2019) pTH10093	0.848	0.882
ERF105 M01632_2.00	Arabidopsis thaliana	CGCCGGCM	KGCCGGCG	PBM Weirauch et al.(2014) pTH7233	0.825	0.824
ERF105 M06676_2.00	Arabidopsis thaliana	NHNNNNNNNNHNNHDBCGCCGCCR	YGGCGGCGVHDNNDNNNNNNNNDN	Dap-seq OMalley et al.(2016) ERF105_colamp_a	0.825	0.824
ERF105 M06677_2.00	Arabidopsis thaliana	HDSCGCCGCCRYHDH	DHDRYGGCGGCGSHD	Dap-seq OMalley et al.(2016) ERF105_col	0.825	0.824
ERF104 M06682_2.00	Arabidopsis thaliana	NNHHDYMDCCGCCGCCRYH	DRYGGCGGCGGHKRHDDNN	Dap-seq OMalley et al.(2016) ERF104_col_a	0.810	0.784
ERF104 M06683_2.00	Arabidopsis thaliana	BHDSCGCCGCCRYHD	HDRYGGCGGCGSHDV	Dap-seq OMalley et al.(2016) ERF104_colamp_a	0.810	0.784
ERF113 M01629_2.00	Arabidopsis thaliana	NNGCCGHHNN	NNDDCGGCNN	PBM Weirauch et al.(2014) pTH8097	0.758	0.745
RAP2-2 M00719_2.00	Arabidopsis thaliana	NNRBYGNN	NNCRVYNN	PBM Chang et al.(2013) pTH7227	0.757	0.706
ERF106 M01628_2.00	Arabidopsis thaliana	NNNVCRVCN	NGBYGBNNN	PBM Weirauch et al.(2014) pTH7426	0.757	0.784
ERF6 M01621_2.00	Arabidopsis thaliana	NNGCCGGCVN	NBGCCGGCNN	PBM Weirauch et al.(2014) pTH7228	0.757	0.784
ERF6 M06637_2.00	Arabidopsis thaliana	NHNHHDCCGCCGCCRYHDHHN	NDDHDRYGGCGGCGGHDDNDN	Dap-seq OMalley et al.(2016) ERF6_col	0.757	0.784
AT2G33710 M01613_2.00	Arabidopsis thaliana	NSMGCCGHMN	NKDCGGCKSN	PBM Weirauch et al.(2014) pTH7543	0.750	0.765
AT2G33710 M06606_2.00	Arabidopsis thaliana	DBCGCCGCCGYHDHHDNH	DNHDDHDRCGGCGGCGVH	Dap-seq OMalley et al.(2016) At2g33710_colamp_a	0.750	0.765
AT2G33710 M06607_2.00	Arabidopsis thaliana	NHDYCKCCGCCGYMD	HKRCGGCGGMGRHDN	Dap-seq OMalley et al.(2016) At2g33710_col	0.750	0.765
ERF2_TOBAC M09727_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF2_01	0.745	0.745
Q7Y1W2_TOBAC M09735_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$CEF1_01	0.735	0.667
ERF096 M01630_2.00	Arabidopsis thaliana	NVGCCGNCNN	NNGNCGGCBN	PBM Weirauch et al.(2014) pTH7909	0.732	0.686
ERF1A M00848_2.00	Arabidopsis thaliana	NNNNRNN	NNYNNNN	PBM Franco-Zorrilla et al.(2014) ATERF1	0.729	0.765
ERF1A M00720_2.00	Arabidopsis thaliana	NMGCCRNCN	NGNYGGCKN	PBM Chang et al.(2013) pTH7202	0.729	0.765
EREBP1 M09708_2.00	Oryza sativa	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$EREBP1_01	0.723	0.627
LOC_Os08g36920 M01634_2.00	Oryza sativa	NNNGSCGHNN	NNDCGSCNNN	PBM Weirauch et al.(2014) pTH8596	0.723	0.706
ERF9 M06670_2.00	Arabidopsis thaliana	YCDCCGCCGYCDHHDYHDYHN	NDRHDRHDDHGRCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF9_col_a	0.713	0.706
ERF9 M06671_2.00	Arabidopsis thaliana	NNHDSCGCCGYCRHWDN	NHWDYGRCGGCGSHDNN	Dap-seq OMalley et al.(2016) ERF9_colamp_a	0.713	0.706
ERF2 M01631_2.00	Arabidopsis thaliana	NNNGCCGNCN	NGNCGGCNNN	PBM Weirauch et al.(2014) pTH8113	0.711	0.745
ERF2 M06672_2.00	Arabidopsis thaliana	HHNHHNYHDYCGCCGCCRYND	HNRYGGCGGCGRHDRNDDNDD	Dap-seq OMalley et al.(2016) ERF2_col_a	0.711	0.745
ERF2 M06673_2.00	Arabidopsis thaliana	NNNNNNNHNNHDSMGCCGCCR	YGGCGGCKSHDNNDNNNNNNN	Dap-seq OMalley et al.(2016) ERF2_colamp_a	0.711	0.745
O65242_TOBAC M09730_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$TSI1_01	0.711	0.627
ERF14 M01045_2.00	Arabidopsis thaliana	NVGCCGNCN	NGNCGGCBN	PBM Sullivan et al.(2014) pTH9793	0.707	0.686
PK19363.1 M01100_2.00	Cannabis sativa	NMGCCGHMNN	NNKDCGGCKN	PBM Lambert et al.(2019) pTH10138	0.707	0.706
PK19363.1 M01643_2.00	Cannabis sativa	CGCCGYCD	HGRCGGCG	PBM Weirauch et al.(2014) pTH9609	0.707	0.706
ERF4_TOBAC M09728_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_02	0.704	0.706
CRF2 M01622_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8680	0.696	0.647
ERF095 M06624_2.00	Arabidopsis thaliana	YCDCCGCCGCCRYHD	HDRYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ESE1_col_a	0.696	0.686
ERF095 M06625_2.00	Arabidopsis thaliana	YHNYYDYHDCCGCCGCCDYH	DRHGGCGGCGGHDRHRRNDR	Dap-seq OMalley et al.(2016) ESE1_colamp_a	0.696	0.686
CRF3 M01633_2.00	Arabidopsis thaliana	NNGCCRNNN	NNNYGGCNN	PBM Weirauch et al.(2014) pTH8110	0.695	0.667
OS05G0497200 M01636_2.00	Oryza sativa	CGSCGCCR	YGGCGSCG	PBM Weirauch et al.(2014) pTH8640	0.693	0.647
RAP2-3 M01050_2.00	Arabidopsis thaliana	CGCCGCCR	YGGCGGCG	PBM Sullivan et al.(2014) pTH8811	0.689	0.667
RAP2-3 M00847_2.00	Arabidopsis thaliana	NMGCCGCCDN	NHGGCGGCKN	PBM Franco-Zorrilla et al.(2014) RAP2.3	0.689	0.667
Q2TN80_WHEAT M09715_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF1_02	0.688	0.588
CRF4 M01626_2.00	Arabidopsis thaliana	SCGCCGCC	GGCGGCGS	PBM Weirauch et al.(2014) pTH8261	0.688	0.706
CRF4 M06645_2.00	Arabidopsis thaliana	BMDCCGCCGCCRCHDHHDCYN	NRGHDDHDGYGGCGGCGGHKV	Dap-seq OMalley et al.(2016) CRF4_col_a	0.688	0.706
CRF4 M06646_2.00	Arabidopsis thaliana	YCDYCGCCGCCGYYD	HRRCGGCGGCGRHGR	Dap-seq OMalley et al.(2016) CRF4_colamp_a	0.688	0.706
A5JTT1_WHEAT M09700_2.00	Triticum aestivum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF3_01	0.686	0.745
A4F248_TOBAC M09725_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF1_01	0.685	0.667
ERF094 M01602_2.00	Arabidopsis thaliana	VGCCGCCD	HGGCGGCB	PBM Weirauch et al.(2014) pTH8276	0.685	0.725
Q5Y836_TOBAC M09732_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$ERF5_02	0.684	0.686
ERF115 M06657_2.00	Arabidopsis thaliana	CCGCCGYMRYHDCCR	YGGHDRYKRCGGCGG	Dap-seq OMalley et al.(2016) ERF115_col_a	0.683	0.725
ERF115 M06658_2.00	Arabidopsis thaliana	CKCCGCCGYMRYHDY	RHDRYKRCGGCGGMG	Dap-seq OMalley et al.(2016) ERF115_colamp_a	0.683	0.725
RAP2-12 M01046_2.00	Arabidopsis thaliana	RSMGBMNNNN	NNNNKVCKSY	PBM Sullivan et al.(2014) pTH7359	0.683	0.686
RAP2-12 M06588_2.00	Arabidopsis thaliana	NHDCCGCCGCCRHHDHNNNHN	NDNNNDHDDYGGCGGCGGHDN	Dap-seq OMalley et al.(2016) RAP212_col_a	0.683	0.686
ERF4 M01616_2.00	Arabidopsis thaliana	VCGCCGCC	GGCGGCGB	PBM Weirauch et al.(2014) pTH8156	0.680	0.686
ERF4 M06616_2.00	Arabidopsis thaliana	YCDCCGCCGCCRHHD	HDDYGGCGGCGGHGR	Dap-seq OMalley et al.(2016) ERF4_col_a	0.680	0.686
ERF4 M06617_2.00	Arabidopsis thaliana	NHNNHNSCGCCGYCRHHDNN	NNHDDYGRCGGCGSNDNNDN	Dap-seq OMalley et al.(2016) ERF4_colamp_a	0.680	0.686
A4F249_TOBAC M09726_2.00	Nicotiana tabacum	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$WRAF2_01	0.677	0.647
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
evm.model.supercontig_89.42	AP2	191	243	RHYRGVRQRPWGKFAAEIRDPNKRGTRIWLGTFDTAIEAAKAYDRAAFKLRGS

Links
Other AP2 family TFs
Other *Carica papaya* TFs

1709 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
Aan_R011824	Calypte anna	Aan_R011824	I
Afo_R002575	Aptenodytes forsteri	Afo_R002575	I
Alligator_sinensis_CCG009270.1	Alligator sinensis	Alligator_sinensis_CCG009270.1	I
Brh_R009664	Buceros rhinoceros	Brh_R009664	I
Cmyd_10006544	Chelonia mydas	Cmyd_10006544	I
ENSAMEG00000017735	Ailuropoda melanoleuca	ENSAMEG00000017735	I
ENSAPLG00000013409	Anas platyrhynchos	ENSAPLG00000013409	I
ENSBTAP00000007904-D1	Bos grunniens	ENSBTAP00000007904-D1	I
ENSCSAG00000005442	Chlorocebus sabaeus	ENSCSAG00000005442	I
ENSFALG00000007271	Ficedula albicollis	ENSFALG00000007271	I
ENSMEUG00000011176	Macropus eugenii	ENSMEUG00000011176	I
ENSMGAG00000007084	Meleagris gallopavo	ENSMGAG00000007084	I
ENSMPUG00000016882	Mustela putorius furo	ENSMPUG00000016882	I
ENSNLEG00000015079	Nomascus leucogenys	ENSNLEG00000015079	I
ENSOANG00000030023	Ornithorhynchus anatinus	ENSOANG00000030023	I
ENSOARG00000000483	Ovis aries	ENSOARG00000000483	I
ENSP00000189444	Macaca fascicularis	ENSP00000189444	I
ENSPANG00000021013	Papio anubis	ENSPANG00000021013	I
ENSPPYG00000002599	Pongo abelii	ENSPPYG00000002599	I
ENSSHAG00000018852	Sarcophilus harrisii	ENSSHAG00000018852	I
ENSSTOG00000002191	Ictidomys tridecemlineatus	ENSSTOG00000002191	I
Gfo_R002459	Geospiza fortis	Gfo_R002459	I
Myotis_brandtii_NFKB2_10025917	Myotis brandtii	Myotis_brandtii_NFKB2_10025917	I
NFKB1	Sus scrofa	ENSSSCG00000030957	I
NFKB2	Dasypus novemcinctus	ENSDNOG00000032784	I
Nfkb2	Dipodomys ordii	ENSDORG00000013409	I
NFKB2	Tursiops truncatus	ENSTTRG00000008357	I
NFKB2	Cavia porcellus	ENSCPOG00000004847	I
NFKB2	Taeniopygia guttata	ENSTGUG00000007491	I
NFKB2	Callithrix jacchus	ENSCJAG00000017928	I
NFKB2	Canis familiaris	ENSCAFG00000010155	I
NFKB2	Bos taurus	ENSBTAG00000006017	I
NFKB2	Sus scrofa	ENSSSCG00000010580	I
NFKB2	Loxodonta africana	ENSLAFG00000006805	I
NFKB2	Pan troglodytes	ENSPTRG00000002888	I
NFKB2	Gorilla gorilla	ENSGGOG00000006971	I
NFKB2	Gallus gallus	ENSGALG00000005653	I
NFKB2	Homo sapiens	ENSG00000077150	D
NFKB2	Microcebus murinus	ENSMICG00000011856	I
NFKB2	Myotis lucifugus	ENSMLUG00000006287	I
NFKB2	Macaca mulatta	ENSMMUG00000002990	I
NFKB2	Felis catus	ENSFCAG00000001242	I
Nfkb2	Mus musculus	ENSMUSG00000025225	D
NFKB2	Equus caballus	ENSECAG00000019593	I
NFKB2	Anolis carolinensis	ENSACAG00000014215	I
NFKB2	Oryctolagus cuniculus	ENSOCUG00000005735	I
NFKB2	Otolemur garnettii	ENSOGAG00000016379	I
NFKB2	Procavia capensis	ENSPCAG00000011503	I
Nfkb2	Rattus norvegicus	ENSRNOG00000019311	I
Ogr18048	Ophisaurus gracilis	Ogr18048	I
Pvit_13855	Pogona vitticeps	Pvit_13855	I

evm.TU.supercontig_89.42 (Carica papaya) AP2

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1709 Related TFs

evm.TU.supercontig_89.42 **(Carica papaya)
AP2**