gene08072-v1.0-hybrid (Fragaria vesca)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 gene08072-v1.0-hybrid T008373_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF096
M01630_2.00 		Arabidopsis thaliana
NVGCCGNCNN
NNGNCGGCBN		 PBM
Weirauch et al.(2014)
pTH7909 		0.748 0.755
Q84J59_MAIZE
M09717_2.00 		Zea mays Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BD1_01 		0.734 0.642
ERF10
M06562_2.00 		Arabidopsis thaliana
NNHNNHNHHDYCGCCGCCRYN
NRYGGCGGCGRHDDNDNNDNN		 Dap-seq
OMalley et al.(2016)
ERF10_col_a 		0.732 0.698
ERF10
M06563_2.00 		Arabidopsis thaliana
HDSCGCCGCCRHHDNNNNNN
NNNNNNHDDYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF10_colamp_a 		0.732 0.698
ERF1B
M01619_2.00 		Arabidopsis thaliana
NMGCCGCCRN
NYGGCGGCKN		 PBM
Weirauch et al.(2014)
pTH8795 		0.729 0.717
ERF1B
M06626_2.00 		Arabidopsis thaliana
NHNNHDYMGCCGCCRYHDNHDNNNNNNN
NNNNNNNHDNHDRYGGCGGCKRHDNNDN		 Dap-seq
OMalley et al.(2016)
ERF1_col_a 		0.729 0.717
ERF1B
M06627_2.00 		Arabidopsis thaliana
MGCCGCCD
HGGCGGCK		 Dap-seq
OMalley et al.(2016)
ERF1_colamp_a 		0.729 0.717
ERF1B
M09703_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2_01 		0.729 0.717
ERF1B
M09704_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_Q2 		0.729 0.717
LEP
M06661_2.00 		Arabidopsis thaliana
NBCKCCGCCGYHDHHDYHNHH
DDNDRHDDHDRCGGCGGMGVN		 Dap-seq
OMalley et al.(2016)
LEP_col_a 		0.726 0.660
ERF086
M06663_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYHD
HDRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
PUCHI_col_a 		0.726 0.642
ERF086
M06664_2.00 		Arabidopsis thaliana
NNNNHDHCKCCGCCGYHDHHDHNNN
NNNDHDDHDRCGGCGGMGDHDNNNN		 Dap-seq
OMalley et al.(2016)
PUCHI_colamp_a 		0.726 0.642
ERF095
M06624_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRYHD
HDRYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ESE1_col_a 		0.716 0.755
ERF095
M06625_2.00 		Arabidopsis thaliana
YHNYYDYHDCCGCCGCCDYH
DRHGGCGGCGGHDRHRRNDR		 Dap-seq
OMalley et al.(2016)
ESE1_colamp_a 		0.716 0.755
ERF14
M01045_2.00 		Arabidopsis thaliana
NVGCCGNCN
NGNCGGCBN		 PBM
Sullivan et al.(2014)
pTH9793 		0.712 0.736
HRE1
M06595_2.00 		Arabidopsis thaliana
NHNBMDCCGCCGCCRYHDHHN
NDDHDRYGGCGGCGGHKVNDN		 Dap-seq
OMalley et al.(2016)
ERF73_col_a 		0.710 0.642
HRE1
M06596_2.00 		Arabidopsis thaliana
HNYHDMHNYCDCCGCCGCCRY
RYGGCGGCGGHGRNDKHDRND		 Dap-seq
OMalley et al.(2016)
ERF73_colamp_a 		0.710 0.642
CRF2
M01622_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8680 		0.710 0.642
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.702 0.660
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.702 0.660
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.702 0.660
ERF105
M01632_2.00 		Arabidopsis thaliana
CGCCGGCM
KGCCGGCG		 PBM
Weirauch et al.(2014)
pTH7233 		0.702 0.660
ERF105
M06676_2.00 		Arabidopsis thaliana
NHNNNNNNNNHNNHDBCGCCGCCR
YGGCGGCGVHDNNDNNNNNNNNDN		 Dap-seq
OMalley et al.(2016)
ERF105_colamp_a 		0.702 0.660
ERF105
M06677_2.00 		Arabidopsis thaliana
HDSCGCCGCCRYHDH
DHDRYGGCGGCGSHD		 Dap-seq
OMalley et al.(2016)
ERF105_col 		0.702 0.660
ERF104
M06682_2.00 		Arabidopsis thaliana
NNHHDYMDCCGCCGCCRYH
DRYGGCGGCGGHKRHDDNN		 Dap-seq
OMalley et al.(2016)
ERF104_col_a 		0.701 0.642
ERF104
M06683_2.00 		Arabidopsis thaliana
BHDSCGCCGCCRYHD
HDRYGGCGGCGSHDV		 Dap-seq
OMalley et al.(2016)
ERF104_colamp_a 		0.701 0.642
ERF2_TOBAC
M09727_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF2_01 		0.698 0.679
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.697 0.660
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.697 0.660
AT2G33710
M01613_2.00 		Arabidopsis thaliana
NSMGCCGHMN
NKDCGGCKSN		 PBM
Weirauch et al.(2014)
pTH7543 		0.694 0.679
AT2G33710
M06606_2.00 		Arabidopsis thaliana
DBCGCCGCCGYHDHHDNH
DNHDDHDRCGGCGGCGVH		 Dap-seq
OMalley et al.(2016)
At2g33710_colamp_a 		0.694 0.679
AT2G33710
M06607_2.00 		Arabidopsis thaliana
NHDYCKCCGCCGYMD
HKRCGGCGGMGRHDN		 Dap-seq
OMalley et al.(2016)
At2g33710_col 		0.694 0.679
ERF091
M06638_2.00 		Arabidopsis thaliana
NNHNYHDCCGCCGCCRY
RYGGCGGCGGHDRNDNN		 Dap-seq
OMalley et al.(2016)
AT4G18450_col_a 		0.691 0.679
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.690 0.642
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.690 0.642
ERF087
M06573_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYYD
HRRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
AT1G28160_col_a 		0.690 0.660
ERF087
M06574_2.00 		Arabidopsis thaliana
HDYCKCCGCCGYCR
YGRCGGCGGMGRHD		 Dap-seq
OMalley et al.(2016)
AT1G28160_colamp_a 		0.690 0.660
LOC_Os08g36920
M01634_2.00 		Oryza sativa
NNNGSCGHNN
NNDCGSCNNN		 PBM
Weirauch et al.(2014)
pTH8596 		0.687 0.679
CRF3
M01633_2.00 		Arabidopsis thaliana
NNGCCRNNN
NNNYGGCNN		 PBM
Weirauch et al.(2014)
pTH8110 		0.687 0.623
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.686 0.642
ERF098
M01618_2.00 		Arabidopsis thaliana
NNGCCGNC
GNCGGCNN		 PBM
Weirauch et al.(2014)
pTH8259 		0.685 0.679
O65242_TOBAC
M09730_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TSI1_01 		0.685 0.566
Q2TN80_WHEAT
M09715_2.00 		Triticum aestivum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF1_02 		0.684 0.604
CRF4
M01626_2.00 		Arabidopsis thaliana
SCGCCGCC
GGCGGCGS		 PBM
Weirauch et al.(2014)
pTH8261 		0.683 0.642
CRF4
M06645_2.00 		Arabidopsis thaliana
BMDCCGCCGCCRCHDHHDCYN
NRGHDDHDGYGGCGGCGGHKV		 Dap-seq
OMalley et al.(2016)
CRF4_col_a 		0.683 0.642
CRF4
M06646_2.00 		Arabidopsis thaliana
YCDYCGCCGCCGYYD
HRRCGGCGGCGRHGR		 Dap-seq
OMalley et al.(2016)
CRF4_colamp_a 		0.683 0.642
Q5Y836_TOBAC
M09732_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF5_02 		0.679 0.660
RAP2-12
M01046_2.00 		Arabidopsis thaliana
RSMGBMNNNN
NNNNKVCKSY		 PBM
Sullivan et al.(2014)
pTH7359 		0.678 0.660
RAP2-12
M06588_2.00 		Arabidopsis thaliana
NHDCCGCCGCCRHHDHNNNHN
NDNNNDHDDYGGCGGCGGHDN		 Dap-seq
OMalley et al.(2016)
RAP212_col_a 		0.678 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna08072.1-v1.0-hybrid AP2 19 73

Links

Other AP2 family TFs
Other Fragaria vesca TFs

1564 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29788.m000340 Ricinus communis 29788.m000340 I
30076.m004607 Ricinus communis 30076.m004607 I
AMTR_s00003p00219710 Amborella trichopoda AMTR_s00003p00219710 I
Aquca_041_00011 Aquilegia coerulea Aquca_041_00011 I
ATMYB2 Arabidopsis thaliana AT2G47190 I
ATMYB2 Arabidopsis lyrata fgenesh2_kg.4__2955__AT2G47190.1 I
ATMYB2 Vitis vinifera VIT_07s0005g01950 I
ATMYB48 Arabidopsis thaliana AT3G46130 I
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I
Bo00954s080 Brassica oleracea Bo00954s080 I
Bo2g025410 Brassica oleracea Bo2g025410 I
Bo3g130340 Brassica oleracea Bo3g130340 I
Bo4g198510 Brassica oleracea Bo4g198510 I
Bo5g043390 Brassica oleracea Bo5g043390 I
Bo9g140750 Brassica oleracea Bo9g140750 I
Bra002533 Brassica rapa Bra002533 I
Bra004473 Brassica rapa Bra004473 I
Bra006694 Brassica rapa Bra006694 I
Bra018223 Brassica rapa Bra018223 I
Bra020289 Brassica rapa Bra020289 I
Bra021389 Brassica rapa Bra021389 I
Cagra.6400s0003 Capsella grandiflora Cagra.6400s0003 I
Carubv10017875m.g Capsella rubella Carubv10017875m.g I
Carubv10023831m.g Capsella rubella Carubv10023831m.g I
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I
cassava25455.m1 Manihot esculenta cassava25455.m1 I
cassava33046.m1 Manihot esculenta cassava33046.m1 I
cassava39393.m1 Manihot esculenta cassava39393.m1 I
cassava45669.m1 Manihot esculenta cassava45669.m1 I
Ca_02593 Cicer arietinum Ca_02593 I
Ca_08069 Cicer arietinum Ca_08069 I
Ciclev10005387m.g Citrus clementina Ciclev10005387m.g I
Ciclev10021479m.g Citrus clementina Ciclev10021479m.g I
Cla008413 Citrullus lanatus Cla008413 I
Cla013488 Citrullus lanatus Cla013488 I
Cla015409 Citrullus lanatus Cla015409 I
Cla022143 Citrullus lanatus Cla022143 I
Cucsa.128620 Cucumis sativus Cucsa.128620 I
Cucsa.213500 Cucumis sativus Cucsa.213500 I
Cucsa.252400 Cucumis sativus Cucsa.252400 I
Cucsa.379880 Cucumis sativus Cucsa.379880 I
Eucgr.B03006 Eucalyptus grandis Eucgr.B03006 I
Eucgr.B03985 Eucalyptus grandis Eucgr.B03985 I
Eucgr.H00907 Eucalyptus grandis Eucgr.H00907 I
Eucgr.H04082 Eucalyptus grandis Eucgr.H04082 I
Eucgr.K03562 Eucalyptus grandis Eucgr.K03562 I
evm.TU.supercontig_14.220 Carica papaya evm.TU.supercontig_14.220 I
evm.TU.supercontig_145.21 Carica papaya evm.TU.supercontig_145.21 I
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I
F775_08129 Aegilops tauschii F775_08129 I
F775_23572 Aegilops tauschii F775_23572 I
GLYMA03G38070 Glycine max GLYMA03G38070 I
GLYMA07G36430 Glycine max GLYMA07G36430 I
GLYMA09G03690 Glycine max GLYMA09G03690 I
GLYMA13G40830 Glycine max GLYMA13G40830 I
GLYMA15G04620 Glycine max GLYMA15G04620 I
GLYMA15G14620 Glycine max GLYMA15G14620 I
GLYMA19G40670 Glycine max GLYMA19G40670 I
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I
Gorai.004G145800 Gossypium raimondii Gorai.004G145800 I
Gorai.005G068900 Gossypium raimondii Gorai.005G068900 I
Gorai.006G080800 Gossypium raimondii Gorai.006G080800 I
Gorai.007G121000 Gossypium raimondii Gorai.007G121000 I
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I
GRMZM2G070849 Zea mays GRMZM2G070849 I
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I
Lus10005886.g Linum usitatissimum Lus10005886.g I
Lus10009037.g Linum usitatissimum Lus10009037.g I
Lus10017096.g Linum usitatissimum Lus10017096.g I
Lus10037818.g Linum usitatissimum Lus10037818.g I
MDP0000143156 Malus domestica MDP0000143156 I
MDP0000177010 Malus domestica MDP0000177010 I
MDP0000823458 Malus domestica MDP0000823458 I
MLOC_6821 Hordeum vulgare MLOC_6821 I
MTR_1g086510 Medicago truncatula MTR_1g086510 I
MTR_1g086530 Medicago truncatula MTR_1g086530 I
MTR_2g033170 Medicago truncatula MTR_2g033170 I
MTR_2g096380 Medicago truncatula MTR_2g096380 I
MTR_4g063100 Medicago truncatula MTR_4g063100 I
MYB59 Arabidopsis thaliana AT5G59780 D
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I
orange1.1g019911m.g Citrus sinensis orange1.1g019911m.g I
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I
orange1.1g043269m.g Citrus sinensis orange1.1g043269m.g I
PK10896.1 Cannabis sativa PK10896.1 I
PK21537.1 Cannabis sativa PK21537.1 I
Pm000809 Prunus mume Pm000809 I
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I
POPTR_0008s10080 Populus trichocarpa POPTR_0008s10080 I
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I
POPTR_0010s15970 Populus trichocarpa POPTR_0010s15970 I
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I
PRUPE_ppa015973mg Prunus persica PRUPE_ppa015973mg I
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I
SapurV1A.0050s0080 Salix purpurea SapurV1A.0050s0080 I
SapurV1A.0114s0410 Salix purpurea SapurV1A.0114s0410 I
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I
SapurV1A.6591s0010 Salix purpurea SapurV1A.6591s0010 I
TCM_004878 Theobroma cacao TCM_004878 I
TCM_041904 Theobroma cacao TCM_041904 I
Thhalv10001584m.g Eutrema salsugineum Thhalv10001584m.g I
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I
Thhalv10021126m.g Eutrema salsugineum Thhalv10021126m.g I
Traes_5BS_95A52A87F Triticum aestivum Traes_5BS_95A52A87F I
Traes_5DS_DE2C70E4C Triticum aestivum Traes_5DS_DE2C70E4C I
Traes_6AL_89BA7115C Triticum aestivum Traes_6AL_89BA7115C I
Traes_6DL_FDFCBA57D Triticum aestivum Traes_6DL_FDFCBA57D I
Traes_6DL_FDFCBA57D1 Triticum aestivum Traes_6DL_FDFCBA57D1 I
TRIUR3_31527 Triticum urartu TRIUR3_31527 I
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I