Bra006694 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra006694 T267776_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.861 0.968
MYB62
M07027_2.00 		Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN		 Dap-seq
OMalley et al.(2016)
MYB62_col_a 		0.662 0.699
MYB62
M07028_2.00 		Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND		 Dap-seq
OMalley et al.(2016)
MYB62_colamp_a 		0.662 0.699
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra006694.1-P Myb 10 57
Bra006694.1-P Myb 63 108

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo2g025410 Brassica oleracea Bo2g025410 I 0.891
Bra020289 Brassica rapa Bra020289 I 0.891
GLYMA12G07110 Glycine max GLYMA12G07110 I 0.862
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.861
MYB59 Arabidopsis thaliana AT5G59780 D 0.861
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.861
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.861
TCM_041904 Theobroma cacao TCM_041904 I 0.861
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.861
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.861
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.861
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.861
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.858
29788.m000340 Ricinus communis 29788.m000340 I 0.858
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I 0.858
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.858
Lus10005886.g Linum usitatissimum Lus10005886.g I 0.858
GLYMA11G15180 Glycine max GLYMA11G15180 I 0.853
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.851
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.851
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.844
Bra002533 Brassica rapa Bra002533 I 0.840
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I 0.836
Pm000809 Prunus mume Pm000809 I 0.836
MDP0000177010 Malus domestica MDP0000177010 I 0.836
Bo3g130340 Brassica oleracea Bo3g130340 I 0.833
Bra018223 Brassica rapa Bra018223 I 0.833
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.833
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.833
MDP0000143156 Malus domestica MDP0000143156 I 0.831
Cla008413 Citrullus lanatus Cla008413 I 0.829
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.829
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.826
Ca_02593 Cicer arietinum Ca_02593 I 0.826
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.826
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.824
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I 0.819
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.818
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.818
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.818
Cla013488 Citrullus lanatus Cla013488 I 0.816
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.816
Bo9g140750 Brassica oleracea Bo9g140750 I 0.810
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I 0.806
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.796
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I 0.786
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.785
GSMUA_Achr11G24690_001 Musa acuminata GSMUA_Achr11G24690_001 I 0.782
mgf020363m Mimulus guttatus mgf020363m I 0.782
mgf025691m Mimulus guttatus mgf025691m I 0.782
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I 0.780
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I 0.780
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I 0.778
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.776
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.772
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.766
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I 0.765
BGIOSGA033532 Oryza indica BGIOSGA033532 I 0.761
F775_28589 Aegilops tauschii F775_28589 I 0.761
MLOC_78504 Hordeum vulgare MLOC_78504 I 0.761
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I 0.761
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I 0.761
MYBAS1 Oryza sativa OS11G0700500 I 0.761
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I 0.761
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I 0.761
TRIUR3_16687 Triticum urartu TRIUR3_16687 I 0.761
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I 0.753
BRADI2G62510 Brachypodium distachyon BRADI2G62510 I 0.748
OB01G54920 Oryza brachyantha OB01G54920 I 0.739
Si026803m.g Setaria italica Si026803m.g I 0.739
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I 0.739
Pavir.J08441 Panicum virgatum Pavir.J08441 I 0.739
Pavir.J33560 Panicum virgatum Pavir.J33560 I 0.739
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I 0.734
BGIOSGA035986 Oryza indica BGIOSGA035986 I 0.721
F775_06315 Aegilops tauschii F775_06315 I 0.721
GRMZM2G047626 Zea mays GRMZM2G047626 I 0.721
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.721
LPERR12G13390 Leersia perrieri LPERR12G13390 I 0.721
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.721
OB12G23080 Oryza brachyantha OB12G23080 I 0.721
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I 0.721
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I 0.721
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I 0.721
MYBAS2 Oryza sativa OS12G0567300 I 0.721
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.721
Si023104m.g Setaria italica Si023104m.g I 0.721
TRIUR3_16862 Triticum urartu TRIUR3_16862 I 0.721
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.721
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.721
OB11G27690 Oryza brachyantha OB11G27690 I 0.716
BGIOSGA005283 Oryza indica BGIOSGA005283 I 0.714
LPERR01G40120 Leersia perrieri LPERR01G40120 I 0.714
OBART01G45730 Oryza barthii OBART01G45730 I 0.714
OPUNC01G44650 Oryza punctata OPUNC01G44650 I 0.714
ORGLA01G0394700 Oryza glaberrima ORGLA01G0394700 I 0.714
ORUFI01G49220 Oryza rufipogon ORUFI01G49220 I 0.714
Pavir.J11826 Panicum virgatum Pavir.J11826 I 0.713
F775_29427 Aegilops tauschii F775_29427 I 0.712
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I 0.712
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I 0.712
TRIUR3_22432 Triticum urartu TRIUR3_22432 I 0.712
GSMUA_Achr10G03710_001 Musa acuminata GSMUA_Achr10G03710_001 I 0.710
F775_23572 Aegilops tauschii F775_23572 I 0.707
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.707
Traes_6AL_89BA7115C Triticum aestivum Traes_6AL_89BA7115C I 0.707
Traes_6DL_FDFCBA57D1 Triticum aestivum Traes_6DL_FDFCBA57D1 I 0.707
Traes_6DL_FDFCBA57D Triticum aestivum Traes_6DL_FDFCBA57D I 0.707
TRIUR3_31527 Triticum urartu TRIUR3_31527 I 0.707
Lus10009037.g Linum usitatissimum Lus10009037.g I 0.707
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I 0.705
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.704
GSMUA_Achr8G34340_001 Musa acuminata GSMUA_Achr8G34340_001 I 0.701
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.694
POPTR_0008s17350 Populus trichocarpa POPTR_0008s17350 I 0.684
evm.TU.supercontig_14.220 Carica papaya evm.TU.supercontig_14.220 I 0.682
Bo7g033260 Brassica oleracea Bo7g033260 I 0.677
Bra015029 Brassica rapa Bra015029 I 0.677
Bo7g050560 Brassica oleracea Bo7g050560 I 0.676
Bra012482 Brassica rapa Bra012482 I 0.676
ATMYB2 Arabidopsis thaliana AT2G47190 I 0.674
Bo00954s080 Brassica oleracea Bo00954s080 I 0.674
Bo4g198510 Brassica oleracea Bo4g198510 I 0.674
Bra004473 Brassica rapa Bra004473 I 0.674
Bra021389 Brassica rapa Bra021389 I 0.674
ATMYB2 Arabidopsis lyrata fgenesh2_kg.4__2955__AT2G47190.1 I 0.674
Bostr.25993s0044 Boechera stricta Bostr.25993s0044 I 0.674
Cagra.6400s0003 Capsella grandiflora Cagra.6400s0003 I 0.674
Carubv10023831m.g Capsella rubella Carubv10023831m.g I 0.674
Thhalv10001584m.g Eutrema salsugineum Thhalv10001584m.g I 0.674
AMTR_s00039p00172240 Amborella trichopoda AMTR_s00039p00172240 I 0.673
MYB305 Arabidopsis thaliana AT3G24310 I 0.673
Bo1g098860 Brassica oleracea Bo1g098860 I 0.673
Bo3g083130 Brassica oleracea Bo3g083130 I 0.673
Bra001941 Brassica rapa Bra001941 I 0.673
Bra028369 Brassica rapa Bra028369 I 0.673
fgenesh2_kg.3__2645__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.3__2645__AT3G24310.1 I 0.673
Ca_20437 Cicer arietinum Ca_20437 I 0.673
cassava24389.valid.m1 Manihot esculenta cassava24389.valid.m1 I 0.673
mgf004640m Mimulus guttatus mgf004640m I 0.673
Bostr.19424s0195 Boechera stricta Bostr.19424s0195 I 0.673
Bostr.2021s0106 Boechera stricta Bostr.2021s0106 I 0.673
Cagra.0454s0003 Capsella grandiflora Cagra.0454s0003 I 0.673
Cagra.1111s0025 Capsella grandiflora Cagra.1111s0025 I 0.673
Carubv10014367m.g Capsella rubella Carubv10014367m.g I 0.673
Carubv10021411m.g Capsella rubella Carubv10021411m.g I 0.673
Gorai.001G207500 Gossypium raimondii Gorai.001G207500 I 0.673
Thhalv10002634m.g Eutrema salsugineum Thhalv10002634m.g I 0.673
AtMYB79 Arabidopsis thaliana AT4G13480 I 0.672
fgenesh2_kg.9__1__AT4G13480.1 Arabidopsis lyrata fgenesh2_kg.9__1__AT4G13480.1 I 0.672
Sb05g027360 Sorghum bicolor Sb05g027360 I 0.672
F775_14172 Aegilops tauschii F775_14172 I 0.671
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I 0.671
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I 0.671
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I 0.671
Gorai.009G413600 Gossypium raimondii Gorai.009G413600 I 0.671
Cagra.15509s0001 Capsella grandiflora Cagra.15509s0001 I 0.670
Carubv10007255m.g Capsella rubella Carubv10007255m.g I 0.670
cassava28986.valid.m1 Manihot esculenta cassava28986.valid.m1 I 0.669
Pavir.Ca00653 Panicum virgatum Pavir.Ca00653 I 0.669
Pavir.J04129 Panicum virgatum Pavir.J04129 I 0.669
SapurV1A.0530s0020 Salix purpurea SapurV1A.0530s0020 I 0.669
AMTR_s00079p00140660 Amborella trichopoda AMTR_s00079p00140660 I 0.667
GSMUA_Achr3G21060_001 Musa acuminata GSMUA_Achr3G21060_001 I 0.667
PRUPE_ppa008877mg Prunus persica PRUPE_ppa008877mg I 0.667
VIT_17s0000g03560 Vitis vinifera VIT_17s0000g03560 I 0.667
Pm025177 Prunus mume Pm025177 I 0.667
MDP0000259898 Malus domestica MDP0000259898 I 0.667
PK22268.1 Cannabis sativa PK22268.1 I 0.667
Si010822m.g Setaria italica Si010822m.g I 0.666
BGIOSGA006030 Oryza indica BGIOSGA006030 I 0.665
Bo3g017760 Brassica oleracea Bo3g017760 N 0.665
BRADI2G37377 Brachypodium distachyon BRADI2G37377 I 0.665
GRMZM2G027697 Zea mays GRMZM2G027697 I 0.665
GRMZM2G043792 Zea mays GRMZM2G043792 I 0.665
OB02G31640 Oryza brachyantha OB02G31640 I 0.665
OBART02G24300 Oryza barthii OBART02G24300 I 0.665
OGLUM02G24660 Oryza glumaepatula OGLUM02G24660 I 0.665
OMERI02G23750 Oryza meridionalis OMERI02G23750 I 0.665
ONIVA09G12460 Oryza nivara ONIVA09G12460 I 0.665
OPUNC02G22200 Oryza punctata OPUNC02G22200 I 0.665
ORGLA02G0210000 Oryza glaberrima ORGLA02G0210000 I 0.665
ORUFI02G25650 Oryza rufipogon ORUFI02G25650 I 0.665
OS02G0618400 Oryza sativa OS02G0618400 I 0.665
PGSC0003DMG400005641 Solanum tuberosum PGSC0003DMG400005641 I 0.665
POPTR_0012s05200 Populus trichocarpa POPTR_0012s05200 I 0.665
POPTR_0015s03770 Populus trichocarpa POPTR_0015s03770 I 0.665
Sb04g026210 Sorghum bicolor Sb04g026210 I 0.665
Si018007m.g Setaria italica Si018007m.g I 0.665
Solyc03g119370.1 Solanum lycopersicum Solyc03g119370.1 I 0.665
28271.m000023 Ricinus communis 28271.m000023 I 0.665
evm.TU.supercontig_3.501 Carica papaya evm.TU.supercontig_3.501 I 0.665
evm.TU.supercontig_3.502 Carica papaya evm.TU.supercontig_3.502 I 0.665
Pavir.Aa01294 Panicum virgatum Pavir.Aa01294 I 0.665
Pavir.J37992 Panicum virgatum Pavir.J37992 I 0.665
SapurV1A.0989s0120 Salix purpurea SapurV1A.0989s0120 I 0.665
SapurV1A.1621s0010 Salix purpurea SapurV1A.1621s0010 I 0.665
SapurV1A.2885s0020 Salix purpurea SapurV1A.2885s0020 I 0.665
BGIOSGA019054 Oryza indica BGIOSGA019054 I 0.664
LPERR05G01030 Leersia perrieri LPERR05G01030 I 0.664
OB05G11070 Oryza brachyantha OB05G11070 I 0.664
OBART05G01080 Oryza barthii OBART05G01080 I 0.664
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I 0.664
OLONG_004480 Oryza longistaminata OLONG_004480 I 0.664
OMERI05G01150 Oryza meridionalis OMERI05G01150 I 0.664
ONIVA05G01120 Oryza nivara ONIVA05G01120 I 0.664
OPUNC05G00970 Oryza punctata OPUNC05G00970 I 0.664
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I 0.664
BGIOSGA002469 Oryza indica BGIOSGA002469 I 0.663
GRMZM2G096358 Zea mays GRMZM2G096358 I 0.663
GRMZM2G162709 Zea mays GRMZM2G162709 I 0.663
GSMUA_Achr3G01370_001 Musa acuminata GSMUA_Achr3G01370_001 I 0.663
GSMUA_Achr6G09760_001 Musa acuminata GSMUA_Achr6G09760_001 I 0.663
LPERR01G01750 Leersia perrieri LPERR01G01750 I 0.663
OB01G11750 Oryza brachyantha OB01G11750 I 0.663
OBART01G01830 Oryza barthii OBART01G01830 I 0.663
OGLUM01G02010 Oryza glumaepatula OGLUM01G02010 I 0.663
OLONG_008024 Oryza longistaminata OLONG_008024 I 0.663
OMERI01G01310 Oryza meridionalis OMERI01G01310 I 0.663
ONIVA01G01990 Oryza nivara ONIVA01G01990 I 0.663
ORGLA01G0016500 Oryza glaberrima ORGLA01G0016500 I 0.663
Sb03g007360 Sorghum bicolor Sb03g007360 I 0.663
orange1.1g044161m.g Citrus sinensis orange1.1g044161m.g I 0.663
Pavir.Ea00660 Panicum virgatum Pavir.Ea00660 I 0.663
Pavir.Eb00654 Panicum virgatum Pavir.Eb00654 I 0.663
MYB62 Arabidopsis thaliana AT1G68320 D 0.662
Bo2g057760 Brassica oleracea Bo2g057760 I 0.662
Bo6g106730 Brassica oleracea Bo6g106730 I 0.662
Bra004297 Brassica rapa Bra004297 I 0.662
MYB62 Arabidopsis lyrata fgenesh1_pg.C_scaffold_2001171 I 0.662
GLYMA10G41930 Glycine max GLYMA10G41930 I 0.662
GLYMA20G25110 Glycine max GLYMA20G25110 I 0.662
MLOC_6786 Hordeum vulgare MLOC_6786 I 0.662
MTR_1g110460 Medicago truncatula MTR_1g110460 I 0.662
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I 0.662
POPTR_0010s13290 Populus trichocarpa POPTR_0010s13290 I 0.662
Solyc05g009230.1 Solanum lycopersicum Solyc05g009230.1 I 0.662
TCM_009642 Theobroma cacao TCM_009642 I 0.662
TCM_012363 Theobroma cacao TCM_012363 I 0.662
Traes_6BL_8E4A831B6 Triticum aestivum Traes_6BL_8E4A831B6 I 0.662
VIT_01s0011g03730 Vitis vinifera VIT_01s0011g03730 I 0.662
Ca_05503 Cicer arietinum Ca_05503 I 0.662
cassava12704.valid.m1 Manihot esculenta cassava12704.valid.m1 I 0.662
Bostr.26959s0063 Boechera stricta Bostr.26959s0063 I 0.662
Ciclev10015986m.g Citrus clementina Ciclev10015986m.g I 0.662
evm.TU.supercontig_798.1 Carica papaya evm.TU.supercontig_798.1 I 0.662
Gorai.002G218600 Gossypium raimondii Gorai.002G218600 I 0.662
Lus10041435.g Linum usitatissimum Lus10041435.g I 0.662
orange1.1g021188m.g Citrus sinensis orange1.1g021188m.g I 0.662
SapurV1A.0078s0260 Salix purpurea SapurV1A.0078s0260 I 0.662
Thhalv10005370m.g Eutrema salsugineum Thhalv10005370m.g I 0.662
Thhalv10018962m.g Eutrema salsugineum Thhalv10018962m.g I 0.662
LjT44F11.120.nd Lotus japonicus LjT44F11.120.nd I 0.662
Bo6g097180 Brassica oleracea Bo6g097180 I 0.661
Bra004041 Brassica rapa Bra004041 I 0.661
Bra033948 Brassica rapa Bra033948 I 0.661