Pavir.Gb02200 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.Gb02200 T289235_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.703 0.817
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Gb02200.1.p Myb 10 57
Pavir.Gb02200.1.p Myb 63 108
Pavir.Gb02200.3.p Myb 1 43
Pavir.Gb02200.4.p Myb 3 26
Pavir.Gb02200.4.p Myb 32 77

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.836
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.835
OBART12G16130 Oryza barthii OBART12G16130 N 0.835
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N 0.835
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.835
Sb05g027370 Sorghum bicolor Sb05g027370 N 0.820
Si026803m.g Setaria italica Si026803m.g I 0.820
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I 0.820
Si023104m.g Setaria italica Si023104m.g I 0.814
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.814
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.814
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N 0.808
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N 0.808
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N 0.808
MLOC_78504 Hordeum vulgare MLOC_78504 I 0.802
Pavir.Ia02093 Panicum virgatum Pavir.Ia02093 N 0.802
BGIOSGA033532 Oryza indica BGIOSGA033532 I 0.797
F775_28589 Aegilops tauschii F775_28589 I 0.797
ORGLA11G0187400 Oryza glaberrima ORGLA11G0187400 I 0.797
ORUFI11G25190 Oryza rufipogon ORUFI11G25190 I 0.797
MYBAS1 Oryza sativa OS11G0700500 I 0.797
Traes_4BS_61B30E3E4 Triticum aestivum Traes_4BS_61B30E3E4 I 0.797
Traes_4DS_0ECE7A421 Triticum aestivum Traes_4DS_0ECE7A421 I 0.797
TRIUR3_16687 Triticum urartu TRIUR3_16687 I 0.797
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.796
Traes_1BS_060C24872 Triticum aestivum Traes_1BS_060C24872 N 0.796
Traes_4AL_8B52D54FD Triticum aestivum Traes_4AL_8B52D54FD I 0.789
Pavir.J08441 Panicum virgatum Pavir.J08441 I 0.789
Pavir.J33560 Panicum virgatum Pavir.J33560 I 0.789
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.789
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.789
Aquca_027_00267 Aquilegia coerulea Aquca_027_00267 N 0.788
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.779
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.778
MYB59 Arabidopsis thaliana AT5G59780 D 0.778
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.778
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.778
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.778
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N 0.778
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.778
PK27824.1 Cannabis sativa PK27824.1 N 0.774
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N 0.773
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N 0.769
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.769
Pavir.J11826 Panicum virgatum Pavir.J11826 I 0.767
GSMUA_Achr2G16200_001 Musa acuminata GSMUA_Achr2G16200_001 I 0.762
MDP0000139931 Malus domestica MDP0000139931 N 0.758
MDP0000169874 Malus domestica MDP0000169874 N 0.758
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.757
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N 0.755
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.755
GSMUA_Achr9G28370_001 Musa acuminata GSMUA_Achr9G28370_001 I 0.752
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.752
OB11G27690 Oryza brachyantha OB11G27690 I 0.752
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.752
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.752
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.751
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.749
BGIOSGA035986 Oryza indica BGIOSGA035986 I 0.747
F775_06315 Aegilops tauschii F775_06315 I 0.747
GRMZM2G047626 Zea mays GRMZM2G047626 I 0.747
LPERR12G13390 Leersia perrieri LPERR12G13390 I 0.747
OB12G23080 Oryza brachyantha OB12G23080 I 0.747
ORGLA12G0141600 Oryza glaberrima ORGLA12G0141600 I 0.747
ORGLA12G0206100 Oryza glaberrima ORGLA12G0206100 I 0.747
ORUFI12G17930 Oryza rufipogon ORUFI12G17930 I 0.747
MYBAS2 Oryza sativa OS12G0567300 I 0.747
TRIUR3_16862 Triticum urartu TRIUR3_16862 I 0.747
Sb05g027360 Sorghum bicolor Sb05g027360 I 0.744
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I 0.744
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.744
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.739
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.734
LjSGA_032074.1 Lotus japonicus LjSGA_032074.1 N 0.733
F775_22650 Aegilops tauschii F775_22650 N 0.732
GSMUA_Achr10G26730_001 Musa acuminata GSMUA_Achr10G26730_001 I 0.732
TCM_021433 Theobroma cacao TCM_021433 I 0.732
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N 0.732
GRMZM2G305856 Zea mays GRMZM2G305856 I 0.729
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N 0.728
Solyc06g005310.2 Solanum lycopersicum Solyc06g005310.2 N 0.728
VIT_06s0004g04140 Vitis vinifera VIT_06s0004g04140 I 0.728
cassava29437.valid.m1 Manihot esculenta cassava29437.valid.m1 N 0.728
Carubv10027237m.g Capsella rubella Carubv10027237m.g N 0.728
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N 0.728
MDP0000177010 Malus domestica MDP0000177010 I 0.728
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.728
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.724
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.724
mgf009707m Mimulus guttatus mgf009707m N 0.722
MDP0000143156 Malus domestica MDP0000143156 I 0.722
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.721
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.721
POPTR_0009s03240 Populus trichocarpa POPTR_0009s03240 I 0.720
Cla008413 Citrullus lanatus Cla008413 I 0.720
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I 0.718
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.717
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.717
TRIUR3_32110 Triticum urartu TRIUR3_32110 N 0.716
MYB27 Arabidopsis thaliana AT3G53200 D 0.714
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.714
Solyc11g073120.1 Solanum lycopersicum Solyc11g073120.1 I 0.714
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.714
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.713
MYB24 Arabidopsis thaliana AT5G40350 D 0.712
mgf001247m Mimulus guttatus mgf001247m N 0.712
Pavir.J23620 Panicum virgatum Pavir.J23620 N 0.712
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.712
Ca_16710 Cicer arietinum Ca_16710 N 0.710
cassava13590.valid.m1 Manihot esculenta cassava13590.valid.m1 N 0.710
Lus10040861.g Linum usitatissimum Lus10040861.g N 0.710
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.710
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.709
MYB21 Arabidopsis thaliana AT3G27810 I 0.708
BGIOSGA013008 Oryza indica BGIOSGA013008 N 0.708
Cla013488 Citrullus lanatus Cla013488 I 0.708
Si003873m.g Setaria italica Si003873m.g N 0.706
Traes_2BL_DAA2104F5 Triticum aestivum Traes_2BL_DAA2104F5 N 0.705
mgf020363m Mimulus guttatus mgf020363m I 0.705
mgf025691m Mimulus guttatus mgf025691m I 0.705
Bo2g025410 Brassica oleracea Bo2g025410 I 0.703
Bo3g130340 Brassica oleracea Bo3g130340 I 0.703
Bra018223 Brassica rapa Bra018223 I 0.703
Bra020289 Brassica rapa Bra020289 I 0.703
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.703
MYB59 Arabidopsis lyrata fgenesh2_kg.8__1928__AT5G59780.3 I 0.703
PRUPE_ppa015954mg Prunus persica PRUPE_ppa015954mg I 0.703
TCM_041904 Theobroma cacao TCM_041904 I 0.703
Pm000809 Prunus mume Pm000809 I 0.703
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.703
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N 0.703
PGSC0003DMG400030397 Solanum tuberosum PGSC0003DMG400030397 N 0.702
Solyc06g075660.2 Solanum lycopersicum Solyc06g075660.2 N 0.702
POPTR_0001s24220 Populus trichocarpa POPTR_0001s24220 I 0.700
MDP0000475808 Malus domestica MDP0000475808 N 0.700
OS01G0975300 Oryza sativa OS01G0975300 N 0.699
Solyc06g005330.2 Solanum lycopersicum Solyc06g005330.2 I 0.699
MYB86 Arabidopsis thaliana AT5G26660 I 0.697
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.697
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.697
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.697
AMTR_s00145p00098450 Amborella trichopoda AMTR_s00145p00098450 I 0.696
MDP0000244980 Malus domestica MDP0000244980 N 0.696
MDP0000470422 Malus domestica MDP0000470422 N 0.696
Bra006694 Brassica rapa Bra006694 I 0.694
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.694
Lus10005886.g Linum usitatissimum Lus10005886.g I 0.694
GLYMA11G15180 Glycine max GLYMA11G15180 I 0.693
Ca_02593 Cicer arietinum Ca_02593 I 0.693
SapurV1A.0008s0940 Salix purpurea SapurV1A.0008s0940 I 0.693
SapurV1A.0008s0950 Salix purpurea SapurV1A.0008s0950 I 0.693
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.692
GSMUA_Achr7G18200_001 Musa acuminata GSMUA_Achr7G18200_001 I 0.692
29788.m000340 Ricinus communis 29788.m000340 I 0.691
cassava13589.valid.m1 Manihot esculenta cassava13589.valid.m1 I 0.691
mgf018110m Mimulus guttatus mgf018110m N 0.691
PGSC0003DMG402010883 Solanum tuberosum PGSC0003DMG402010883 N 0.687
TRIUR3_12300 Triticum urartu TRIUR3_12300 N 0.687
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.686
evm.TU.supercontig_190.35 Carica papaya evm.TU.supercontig_190.35 I 0.686
Gorai.003G136400 Gossypium raimondii Gorai.003G136400 I 0.686
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.684
GLYMA12G07110 Glycine max GLYMA12G07110 I 0.684
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N 0.684
GLYMA16G00920 Glycine max GLYMA16G00920 I 0.683
GSMUA_Achr10G13520_001 Musa acuminata GSMUA_Achr10G13520_001 I 0.683
GSMUA_Achr8G02640_001 Musa acuminata GSMUA_Achr8G02640_001 I 0.683
Bo9g140750 Brassica oleracea Bo9g140750 I 0.682
Bra002533 Brassica rapa Bra002533 I 0.682
GSMUA_Achr6G15370_001 Musa acuminata GSMUA_Achr6G15370_001 I 0.682
BRADI2G37377 Brachypodium distachyon BRADI2G37377 I 0.681
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.681
WER Arabidopsis thaliana AT5G14750 D 0.680
Bo3g017760 Brassica oleracea Bo3g017760 N 0.678
TT2 Arabidopsis thaliana AT5G35550 I 0.677
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N 0.677
F775_29427 Aegilops tauschii F775_29427 I 0.676
GSMUA_Achr5G28350_001 Musa acuminata GSMUA_Achr5G28350_001 I 0.676
Traes_3AL_A8AF980F3 Triticum aestivum Traes_3AL_A8AF980F3 I 0.676
TRAES3BF065400010CFD_g Triticum aestivum TRAES3BF065400010CFD_g I 0.676
TRIUR3_22432 Triticum urartu TRIUR3_22432 I 0.676
TCM_005371 Theobroma cacao TCM_005371 I 0.674
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.673
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.673
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N 0.673
Bra009910 Brassica rapa Bra009910 N 0.671
Traes_5AL_D1807A4E0 Triticum aestivum Traes_5AL_D1807A4E0 N 0.671
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.670
MDP0000153773 Malus domestica MDP0000153773 N 0.670
Pavir.J24653 Panicum virgatum Pavir.J24653 N 0.670
F775_14172 Aegilops tauschii F775_14172 I 0.668
Traes_1BS_B44ECE28C Triticum aestivum Traes_1BS_B44ECE28C I 0.668
Traes_1DS_47E2D90AC1 Triticum aestivum Traes_1DS_47E2D90AC1 I 0.668
Traes_1DS_47E2D90AC Triticum aestivum Traes_1DS_47E2D90AC I 0.668
Pavir.Ca00653 Panicum virgatum Pavir.Ca00653 I 0.668
Pavir.J04129 Panicum virgatum Pavir.J04129 I 0.668
LjSGA_148662.1 Lotus japonicus LjSGA_148662.1 N 0.665
mgf021749m Mimulus guttatus mgf021749m N 0.664
30147.m013749 Ricinus communis 30147.m013749 N 0.663
BGIOSGA019054 Oryza indica BGIOSGA019054 I 0.662
LPERR05G01030 Leersia perrieri LPERR05G01030 I 0.662
OB05G11070 Oryza brachyantha OB05G11070 I 0.662
OBART05G01080 Oryza barthii OBART05G01080 I 0.662
OGLUM05G01090 Oryza glumaepatula OGLUM05G01090 I 0.662
OLONG_004480 Oryza longistaminata OLONG_004480 I 0.662
OMERI05G01150 Oryza meridionalis OMERI05G01150 I 0.662
ONIVA05G01120 Oryza nivara ONIVA05G01120 I 0.662
OPUNC05G00970 Oryza punctata OPUNC05G00970 I 0.662
ORUFI05G01110 Oryza rufipogon ORUFI05G01110 I 0.662
Bo5g131980 Brassica oleracea Bo5g131980 N 0.661
GRMZM2G032180 Zea mays GRMZM2G032180 N 0.661
Cagra.2519s0060 Capsella grandiflora Cagra.2519s0060 N 0.661
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.661
orange1.1g038824m.g Citrus sinensis orange1.1g038824m.g N 0.661