Cagra.10637s0001 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.10637s0001 T286008_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
MYB59
M00883_2.00 		Arabidopsis thaliana
NKACCTAAYN
NRTTAGGTMN		 PBM
Franco-Zorrilla et al.(2014)
MYB59 		0.630 1.000
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.10637s0001.1.p Myb 5 26
Cagra.10637s0001.1.p Myb 32 77
Cagra.10637s0001.2.p Myb 1 43

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

181 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.909
MYB59 Arabidopsis thaliana AT5G59780 D 0.909
cassava29437.valid.m1 Manihot esculenta cassava29437.valid.m1 N 0.909
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.909
Carubv10027237m.g Capsella rubella Carubv10027237m.g N 0.909
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N 0.909
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.909
Thhalv10002648m.g Eutrema salsugineum Thhalv10002648m.g I 0.909
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.909
Cucsa.213500 Cucumis sativus Cucsa.213500 I 0.905
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.903
GLYMA13G40830 Glycine max GLYMA13G40830 I 0.902
GLYMA15G04620 Glycine max GLYMA15G04620 I 0.902
PGSC0003DMG400015536 Solanum tuberosum PGSC0003DMG400015536 I 0.899
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N 0.893
Solyc06g005310.2 Solanum lycopersicum Solyc06g005310.2 N 0.893
Ca_16710 Cicer arietinum Ca_16710 N 0.891
cassava13590.valid.m1 Manihot esculenta cassava13590.valid.m1 N 0.891
PK27824.1 Cannabis sativa PK27824.1 N 0.891
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.887
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N 0.886
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N 0.886
Lus10040861.g Linum usitatissimum Lus10040861.g N 0.885
PGSC0003DMG400030397 Solanum tuberosum PGSC0003DMG400030397 N 0.883
Solyc06g075660.2 Solanum lycopersicum Solyc06g075660.2 N 0.883
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N 0.880
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.878
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N 0.871
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.871
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.869
Gorai.013G265300 Gossypium raimondii Gorai.013G265300 I 0.869
Aquca_027_00267 Aquilegia coerulea Aquca_027_00267 N 0.849
mgf009707m Mimulus guttatus mgf009707m N 0.848
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.846
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.846
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N 0.842
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N 0.842
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N 0.842
MLOC_52439 Hordeum vulgare MLOC_52439 I 0.841
Traes_1BS_060C24872 Triticum aestivum Traes_1BS_060C24872 N 0.841
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.837
OBART12G16130 Oryza barthii OBART12G16130 N 0.837
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N 0.837
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.837
PGSC0003DMG402010883 Solanum tuberosum PGSC0003DMG402010883 N 0.834
Si023104m.g Setaria italica Si023104m.g I 0.823
Pavir.Ca02588 Panicum virgatum Pavir.Ca02588 I 0.823
Pavir.J11500 Panicum virgatum Pavir.J11500 I 0.823
Sb05g027370 Sorghum bicolor Sb05g027370 N 0.817
Si026803m.g Setaria italica Si026803m.g I 0.817
Pavir.Hb00058 Panicum virgatum Pavir.Hb00058 I 0.817
Pavir.J08441 Panicum virgatum Pavir.J08441 I 0.817
Pavir.J33560 Panicum virgatum Pavir.J33560 I 0.817
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.814
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.810
Si003873m.g Setaria italica Si003873m.g N 0.805
MLOC_78504 Hordeum vulgare MLOC_78504 I 0.799
Bo3g017760 Brassica oleracea Bo3g017760 N 0.795
mgf001247m Mimulus guttatus mgf001247m N 0.794
MYB24 Arabidopsis thaliana AT5G40350 D 0.793
Pavir.J23620 Panicum virgatum Pavir.J23620 N 0.791
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.790
MYB21 Arabidopsis thaliana AT3G27810 I 0.789
BRADI4G04050 Brachypodium distachyon BRADI4G04050 I 0.789
GLYMA12G07110 Glycine max GLYMA12G07110 I 0.789
OS01G0975300 Oryza sativa OS01G0975300 N 0.789
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.782
Pavir.Ia02093 Panicum virgatum Pavir.Ia02093 N 0.781
MDP0000139931 Malus domestica MDP0000139931 N 0.780
MDP0000169874 Malus domestica MDP0000169874 N 0.780
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.778
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.772
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.772
GLYMA11G15180 Glycine max GLYMA11G15180 I 0.771
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N 0.770
GRMZM2G048136 Zea mays GRMZM2G048136 I 0.768
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N 0.766
TCM_021433 Theobroma cacao TCM_021433 I 0.765
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.765
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I 0.765
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.765
Traes_2BL_DAA2104F5 Triticum aestivum Traes_2BL_DAA2104F5 N 0.763
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.762
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.760
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N 0.758
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.756
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.754
F775_22650 Aegilops tauschii F775_22650 N 0.753
mgf018110m Mimulus guttatus mgf018110m N 0.753
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.752
fgenesh2_kg.397__1__AT3G24310.1 Arabidopsis lyrata fgenesh2_kg.397__1__AT3G24310.1 N 0.751
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.751
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.750
BGIOSGA013008 Oryza indica BGIOSGA013008 N 0.749
mgf021749m Mimulus guttatus mgf021749m N 0.748
MYB27 Arabidopsis thaliana AT3G53200 D 0.747
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.746
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.745
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.745
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.741
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.740
TRIUR3_32110 Triticum urartu TRIUR3_32110 N 0.740
MDP0000475808 Malus domestica MDP0000475808 N 0.739
MYB86 Arabidopsis thaliana AT5G26660 I 0.736
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.733
Thhalv10022197m.g Eutrema salsugineum Thhalv10022197m.g N 0.733
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.731
GRMZM2G305856 Zea mays GRMZM2G305856 I 0.730
TCM_005371 Theobroma cacao TCM_005371 I 0.730
Traes_2DL_77F235694 Triticum aestivum Traes_2DL_77F235694 N 0.730
MDP0000153773 Malus domestica MDP0000153773 N 0.727
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N 0.726
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N 0.726
TRIUR3_12300 Triticum urartu TRIUR3_12300 N 0.722
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.721
WER Arabidopsis thaliana AT5G14750 D 0.720
30147.m013749 Ricinus communis 30147.m013749 N 0.720
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.720
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.719
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.719
Pavir.J24653 Panicum virgatum Pavir.J24653 N 0.719
Bo5g131980 Brassica oleracea Bo5g131980 N 0.718
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.718
TT2 Arabidopsis thaliana AT5G35550 I 0.717
Traes_2DL_304E62CCE Triticum aestivum Traes_2DL_304E62CCE N 0.712
Bra009910 Brassica rapa Bra009910 N 0.710
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.710
Cagra.2519s0060 Capsella grandiflora Cagra.2519s0060 N 0.710
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.710
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.709
MYB114 Arabidopsis thaliana AT1G66380 I 0.702
BGIOSGA002307 Oryza indica BGIOSGA002307 N 0.702
GLYMA16G00920 Glycine max GLYMA16G00920 I 0.702
Bostr.3125s0001 Boechera stricta Bostr.3125s0001 N 0.702
Traes_3DL_75F8A05CF Triticum aestivum Traes_3DL_75F8A05CF N 0.700
F775_32151 Aegilops tauschii F775_32151 N 0.698
GRMZM2G032180 Zea mays GRMZM2G032180 N 0.698
Traes_2AL_E8C400686 Triticum aestivum Traes_2AL_E8C400686 N 0.697
Cagra.1655s0054 Capsella grandiflora Cagra.1655s0054 N 0.695
Cagra.17198s0001 Capsella grandiflora Cagra.17198s0001 N 0.694
Bra031041 Brassica rapa Bra031041 N 0.693
LjSGA_148662.1 Lotus japonicus LjSGA_148662.1 N 0.693
OLONG_004747 Oryza longistaminata OLONG_004747 N 0.692
Ca_11427 Cicer arietinum Ca_11427 N 0.692
30072.m000986 Ricinus communis 30072.m000986 N 0.692
PDK_20s1338951g004 Phoenix dactylifera PDK_20s1338951g004 N 0.691
MLOC_56753 Hordeum vulgare MLOC_56753 I 0.689
Traes_2DS_EEE59C2E7 Triticum aestivum Traes_2DS_EEE59C2E7 N 0.689
LjSGA_032074.1 Lotus japonicus LjSGA_032074.1 N 0.689
PDK_20s1933711g001 Phoenix dactylifera PDK_20s1933711g001 N 0.689
mgf026560m Mimulus guttatus mgf026560m N 0.688
mgf026463m Mimulus guttatus mgf026463m N 0.687
MTR_6g055910 Medicago truncatula MTR_6g055910 I 0.686
PGSC0003DMG400013172 Solanum tuberosum PGSC0003DMG400013172 N 0.686
Al_scaffold_0002_1204 Arabidopsis lyrata Al_scaffold_0002_1204 N 0.684
GLYMA08G44950 Glycine max GLYMA08G44950 N 0.684
Pavir.J19088 Panicum virgatum Pavir.J19088 N 0.684
Pm029438 Prunus mume Pm029438 N 0.683
Ciclev10006469m.g Citrus clementina Ciclev10006469m.g N 0.683
PK16488.1 Cannabis sativa PK16488.1 N 0.683
PK22178.1 Cannabis sativa PK22178.1 N 0.683
SapurV1A.0552s0030 Salix purpurea SapurV1A.0552s0030 I 0.682
Bo2g011790 Brassica oleracea Bo2g011790 N 0.681
VIT_02s0033g00460 Vitis vinifera VIT_02s0033g00460 N 0.680
LjT39N06.160.nd Lotus japonicus LjT39N06.160.nd N 0.680
PDK_20s1415541g003 Phoenix dactylifera PDK_20s1415541g003 N 0.679
MDP0000242612 Malus domestica MDP0000242612 N 0.678
PDK_20s1316381g001 Phoenix dactylifera PDK_20s1316381g001 N 0.678
MYB94 Arabidopsis thaliana AT3G47600 D 0.676
MDP0000581761 Malus domestica MDP0000581761 N 0.673
MDP0000244980 Malus domestica MDP0000244980 N 0.669
TRIUR3_33813 Triticum urartu TRIUR3_33813 N 0.668
TCM_013983 Theobroma cacao TCM_013983 I 0.667
TCM_032927 Theobroma cacao TCM_032927 I 0.666
Gorai.004G064100 Gossypium raimondii Gorai.004G064100 I 0.664
MDP0000470422 Malus domestica MDP0000470422 N 0.664
OBART01G27550 Oryza barthii OBART01G27550 N 0.663
Traes_5AL_D1807A4E0 Triticum aestivum Traes_5AL_D1807A4E0 N 0.663
ORGLA01G0040600 Oryza glaberrima ORGLA01G0040600 N 0.662
ATMYB48-1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_5001097 I 0.630
Carubv10017875m.g Capsella rubella Carubv10017875m.g I 0.630