Pavir.J24653 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J24653 T289422_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J24653.1.p Myb 5 26
Pavir.J24653.1.p Myb 32 77

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

128 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB86 Arabidopsis thaliana AT5G26660 I 0.797
SapurV1A.1387s0090 Salix purpurea SapurV1A.1387s0090 I 0.793
BRADI2G11080 Brachypodium distachyon BRADI2G11080 I 0.791
Traes_3DL_75F8A05CF Triticum aestivum Traes_3DL_75F8A05CF N 0.772
Cucsa.061660 Cucumis sativus Cucsa.061660 I 0.772
SapurV1A.0177s0130 Salix purpurea SapurV1A.0177s0130 I 0.772
Bra009910 Brassica rapa Bra009910 N 0.770
BGIOSGA037085 Oryza indica BGIOSGA037085 N 0.767
Gorai.013G139200 Gossypium raimondii Gorai.013G139200 I 0.767
BGIOSGA027658 Oryza indica BGIOSGA027658 N 0.766
MLOC_16981 Hordeum vulgare MLOC_16981 I 0.766
MTR_7g111290 Medicago truncatula MTR_7g111290 I 0.766
MTR_6g055910 Medicago truncatula MTR_6g055910 I 0.762
Eucgr.D02099 Eucalyptus grandis Eucgr.D02099 N 0.757
TRIUR3_33813 Triticum urartu TRIUR3_33813 N 0.754
POPTR_0006s23810 Populus trichocarpa POPTR_0006s23810 I 0.753
PDK_20s1528141g001 Phoenix dactylifera PDK_20s1528141g001 N 0.752
TRIUR3_12300 Triticum urartu TRIUR3_12300 N 0.750
Bo5g131980 Brassica oleracea Bo5g131980 N 0.748
orange1.1g044587m.g Citrus sinensis orange1.1g044587m.g N 0.748
PRUPE_ppa008906mg Prunus persica PRUPE_ppa008906mg I 0.747
evm.TU.contig_33658 Carica papaya evm.TU.contig_33658 N 0.747
Traes_2DL_304E62CCE Triticum aestivum Traes_2DL_304E62CCE N 0.746
SapurV1A.0263s0400 Salix purpurea SapurV1A.0263s0400 I 0.746
MDP0000153773 Malus domestica MDP0000153773 N 0.744
F775_32151 Aegilops tauschii F775_32151 N 0.741
PDK_20s1316381g001 Phoenix dactylifera PDK_20s1316381g001 N 0.741
MLOC_13019 Hordeum vulgare MLOC_13019 I 0.740
PDK_20s1354851g002 Phoenix dactylifera PDK_20s1354851g002 N 0.737
GRMZM2G032180 Zea mays GRMZM2G032180 N 0.736
PDK_20s1933711g001 Phoenix dactylifera PDK_20s1933711g001 N 0.735
WER Arabidopsis thaliana AT5G14750 D 0.733
GRMZM2G106558 Zea mays GRMZM2G106558 I 0.733
mgf001247m Mimulus guttatus mgf001247m N 0.733
Ciclev10020307m.g Citrus clementina Ciclev10020307m.g I 0.733
PDK_20s1376841g001 Phoenix dactylifera PDK_20s1376841g001 N 0.732
TT2 Arabidopsis thaliana AT5G35550 I 0.731
MYB27 Arabidopsis thaliana AT3G53200 D 0.728
MDP0000475808 Malus domestica MDP0000475808 N 0.728
30147.m013749 Ricinus communis 30147.m013749 N 0.727
cassava11833.valid.m1 Manihot esculenta cassava11833.valid.m1 N 0.727
BGIOSGA013008 Oryza indica BGIOSGA013008 N 0.722
GRMZM2G130149 Zea mays GRMZM2G130149 I 0.722
OBART12G16130 Oryza barthii OBART12G16130 N 0.722
OGLUM12G17720 Oryza glumaepatula OGLUM12G17720 N 0.722
Sb08g018580 Sorghum bicolor Sb08g018580 I 0.722
Traes_5AS_7D519210E Triticum aestivum Traes_5AS_7D519210E N 0.722
Traes_5AS_D9A4C1AB0 Triticum aestivum Traes_5AS_D9A4C1AB0 N 0.722
Traes_5BS_D1C03C165 Triticum aestivum Traes_5BS_D1C03C165 N 0.722
Traes_5DS_1EF547639 Triticum aestivum Traes_5DS_1EF547639 N 0.722
Eucgr.J02073 Eucalyptus grandis Eucgr.J02073 N 0.722
Pavir.Ha00303 Panicum virgatum Pavir.Ha00303 I 0.722
Gorai.001G268000 Gossypium raimondii Gorai.001G268000 I 0.720
ATMYB48 Arabidopsis thaliana AT3G46130 I 0.719
MYB59 Arabidopsis thaliana AT5G59780 D 0.719
Cucsa.379880 Cucumis sativus Cucsa.379880 I 0.719
Bostr.18473s0331 Boechera stricta Bostr.18473s0331 I 0.719
Bostr.26833s0259 Boechera stricta Bostr.26833s0259 N 0.719
Cagra.10637s0001 Capsella grandiflora Cagra.10637s0001 I 0.719
Cagra.1317s0038 Capsella grandiflora Cagra.1317s0038 N 0.719
gene13970-v1.0-hybrid Fragaria vesca gene13970-v1.0-hybrid N 0.719
Gorai.001G107900 Gossypium raimondii Gorai.001G107900 I 0.719
SapurV1A.0040s0010 Salix purpurea SapurV1A.0040s0010 I 0.719
SapurV1A.0489s0220 Salix purpurea SapurV1A.0489s0220 I 0.719
Thhalv10014524m.g Eutrema salsugineum Thhalv10014524m.g I 0.719
PK27824.1 Cannabis sativa PK27824.1 N 0.719
AtMYB10 Arabidopsis thaliana AT3G12820 D 0.717
TCM_005371 Theobroma cacao TCM_005371 I 0.717
mgf021749m Mimulus guttatus mgf021749m N 0.717
BRADI4G09490 Brachypodium distachyon BRADI4G09490 N 0.715
TCM_021433 Theobroma cacao TCM_021433 I 0.712
LjSGA_148662.1 Lotus japonicus LjSGA_148662.1 N 0.712
BRADI1G45510 Brachypodium distachyon BRADI1G45510 I 0.711
MYB21 Arabidopsis thaliana AT3G27810 I 0.710
MLOC_56753 Hordeum vulgare MLOC_56753 I 0.709
Traes_2DS_EEE59C2E7 Triticum aestivum Traes_2DS_EEE59C2E7 N 0.709
GRMZM2G001223 Zea mays GRMZM2G001223 I 0.708
MLOC_17928 Hordeum vulgare MLOC_17928 I 0.708
Cagra.2519s0060 Capsella grandiflora Cagra.2519s0060 N 0.708
PDK_20s1415541g003 Phoenix dactylifera PDK_20s1415541g003 N 0.705
BGIOSGA002307 Oryza indica BGIOSGA002307 N 0.703
GLYMA08G44950 Glycine max GLYMA08G44950 N 0.703
TRIUR3_32110 Triticum urartu TRIUR3_32110 N 0.701
Cagra.1390s0010 Capsella grandiflora Cagra.1390s0010 I 0.701
PDK_20s1308492g002 Phoenix dactylifera PDK_20s1308492g002 N 0.701
MYB24 Arabidopsis thaliana AT5G40350 D 0.700
MTR_4g063100 Medicago truncatula MTR_4g063100 I 0.699
Ciclev10029019m.g Citrus clementina Ciclev10029019m.g N 0.699
orange1.1g023677m.g Citrus sinensis orange1.1g023677m.g I 0.699
GLYMA16G00920 Glycine max GLYMA16G00920 I 0.698
mgf018110m Mimulus guttatus mgf018110m N 0.695
SapurV1A.0093s0250 Salix purpurea SapurV1A.0093s0250 I 0.695
mgf009707m Mimulus guttatus mgf009707m N 0.694
F775_22650 Aegilops tauschii F775_22650 N 0.693
Pavir.Fa00877 Panicum virgatum Pavir.Fa00877 I 0.693
Pavir.Gb01276 Panicum virgatum Pavir.Gb01276 N 0.692
evm.TU.supercontig_87.85 Carica papaya evm.TU.supercontig_87.85 N 0.691
Pavir.Ia02093 Panicum virgatum Pavir.Ia02093 N 0.691
Si003873m.g Setaria italica Si003873m.g N 0.690
PDK_20s1338951g004 Phoenix dactylifera PDK_20s1338951g004 N 0.690
MTR_2g096380 Medicago truncatula MTR_2g096380 I 0.688
Bo2g011790 Brassica oleracea Bo2g011790 N 0.687
Pm029438 Prunus mume Pm029438 N 0.687
TCM_032927 Theobroma cacao TCM_032927 I 0.686
mgf026560m Mimulus guttatus mgf026560m N 0.685
MYB114 Arabidopsis thaliana AT1G66380 I 0.684
mgf026463m Mimulus guttatus mgf026463m N 0.684
Bostr.3125s0001 Boechera stricta Bostr.3125s0001 N 0.684
Pavir.Ca00655 Panicum virgatum Pavir.Ca00655 I 0.680
Pavir.J36591 Panicum virgatum Pavir.J36591 I 0.680
OS01G0975300 Oryza sativa OS01G0975300 N 0.679
MDP0000139931 Malus domestica MDP0000139931 N 0.678
MDP0000169874 Malus domestica MDP0000169874 N 0.678
Pavir.J23620 Panicum virgatum Pavir.J23620 N 0.678
Traes_2BL_DAA2104F5 Triticum aestivum Traes_2BL_DAA2104F5 N 0.676
VIT_02s0033g00460 Vitis vinifera VIT_02s0033g00460 N 0.675
Traes_2AL_E8C400686 Triticum aestivum Traes_2AL_E8C400686 N 0.673
Traes_5AL_D1807A4E0 Triticum aestivum Traes_5AL_D1807A4E0 N 0.671
Cagra.17198s0001 Capsella grandiflora Cagra.17198s0001 N 0.671
Bra031041 Brassica rapa Bra031041 N 0.670
Pavir.Gb02200 Panicum virgatum Pavir.Gb02200 I 0.670
ORGLA01G0040600 Oryza glaberrima ORGLA01G0040600 N 0.668
Eucgr.B02401 Eucalyptus grandis Eucgr.B02401 N 0.667
Lus10020309.g Linum usitatissimum Lus10020309.g N 0.666
Al_scaffold_0002_1204 Arabidopsis lyrata Al_scaffold_0002_1204 N 0.664
Cagra.1655s0054 Capsella grandiflora Cagra.1655s0054 N 0.663
OB12G21380 Oryza brachyantha OB12G21380 I 0.662
Gorai.013G118300 Gossypium raimondii Gorai.013G118300 I 0.662