CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Gorai.012G130600 *(Gossypium raimondii)* AP2
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00847 (AP2)	IPR001471	Gorai.012G130600	T008704_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
ERF054 M06647_2.00	Arabidopsis thaliana	NNNNNNNNNHHDSCRCCGHC	GDCGGYGSHDDNNNNNNNNN	Dap-seq OMalley et al.(2016) At4g28140_col_a	0.724	0.860
ERF054 M06648_2.00	Arabidopsis thaliana	NNNNHDBCRCCGHCM	KGDCGGYGVHDNNNN	Dap-seq OMalley et al.(2016) At4g28140_colamp_a	0.724	0.860
AT5G65130 M06686_2.00	Arabidopsis thaliana	YCDYCDCCRCCGCCN	NGGCGGYGGHGRHGR	Dap-seq OMalley et al.(2016) At5g65130_col_a	0.715	0.800
AT5G65130 M06687_2.00	Arabidopsis thaliana	NNNNHNNHDSCRCCGMCMW	WKGKCGGYGSHDNNDNNNN	Dap-seq OMalley et al.(2016) At5g65130_colamp_a	0.715	0.800
ERF055 M06577_2.00	Arabidopsis thaliana	NHDYCACCGHCMHH	DDKGDCGGTGRHDN	Dap-seq OMalley et al.(2016) At1g36060_col_a	0.713	0.900
ERF055 M06578_2.00	Arabidopsis thaliana	NHDYCACCGHCMHH	DDKGDCGGTGRHDN	Dap-seq OMalley et al.(2016) At1g36060_colamp_a	0.713	0.900
RAP2-4 M01612_2.00	Arabidopsis thaliana	NRCCGHCMNN	NNKGDCGGYN	PBM Weirauch et al.(2014) pTH8092	0.697	0.860
For this family, TFs with SR scores > 0.677* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Gorai.012G130600.1	AP2	141	192	KLYRGVRQRQWGKWVAEIRLPRERTRLWLGTFDTAEDAALAYDRKAFKLRGK

Links
Other AP2 family TFs
Other *Gossypium raimondii* TFs

350 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
AB03766.1	Alternaria brassicicola	AB03766.1	N	0.000
BGHDH14_bgh01891	Blumeria graminis	BGHDH14_bgh01891	I	0.000
COCC4DRAFT_76975	Bipolaris maydis	COCC4DRAFT_76975	N	0.000
COCCADRAFT_107226	Bipolaris zeicola	COCCADRAFT_107226	N	0.000
COCMIDRAFT_106375	Bipolaris oryzae	COCMIDRAFT_106375	N	0.000
COCSADRAFT_272980	Bipolaris sorokiniana	COCSADRAFT_272980	N	0.000
COCVIDRAFT_14231	Bipolaris victoriae	COCVIDRAFT_14231	N	0.000
MBM_05037	Marssonina brunnea	MBM_05037	N	0.000
PMAA_046250	Penicillium marneffei	PMAA_046250	I	0.000
PMAA_046250	Talaromyces marneffei	PMAA_046250	I	0.000
PTRG_03911	Pyrenophora triticirepentis	PTRG_03911	N	0.000
PV09_03784	Verruconis gallopava	PV09_03784	N	0.000
SBOR_8201	Sclerotinia borealis	SBOR_8201	N	0.000
SETTUDRAFT_134164	Setosphaeria turcica	SETTUDRAFT_134164	N	0.000
SNOG_04842	Phaeosphaeria nodorum	SNOG_04842	N	0.000
SNOG_04842	Stagonospora nodorum	SNOG_04842	N	0.000
TSTA_035500	Talaromyces stipitatus	TSTA_035500	I	0.000
W97_02133	Coniosporium apollinis	W97_02133	N	0.000