Pavir.Ga00485 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ga00485 T009461_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-6
M00717_2.00 		Arabidopsis thaliana
NBGCYGNH
DNCRGCVN		 PBM
Chang et al.(2013)
pTH7225 		0.738 0.776
RAP2-6
M00841_2.00 		Arabidopsis thaliana
NGCCGHHNNN
NNNDDCGGCN		 PBM
Franco-Zorrilla et al.(2014)
RAP2.6 		0.738 0.776
RAP2-6
M06579_2.00 		Arabidopsis thaliana
HHDYCKCCGCCGYMD
HKRCGGCGGMGRHDD		 Dap-seq
OMalley et al.(2016)
RAP26_col_a 		0.738 0.776
RAP2-6
M06580_2.00 		Arabidopsis thaliana
CGCCGY
RCGGCG		 Dap-seq
OMalley et al.(2016)
RAP26_colamp_a 		0.738 0.776
ERF115
M06657_2.00 		Arabidopsis thaliana
CCGCCGYMRYHDCCR
YGGHDRYKRCGGCGG		 Dap-seq
OMalley et al.(2016)
ERF115_col_a 		0.715 0.735
ERF115
M06658_2.00 		Arabidopsis thaliana
CKCCGCCGYMRYHDY
RHDRYKRCGGCGGMG		 Dap-seq
OMalley et al.(2016)
ERF115_colamp_a 		0.715 0.735
ERF8
M01608_2.00 		Arabidopsis thaliana
MGCCGNMNNN
NNNKNCGGCK		 PBM
Weirauch et al.(2014)
pTH8095 		0.707 0.816
ERF8
M06586_2.00 		Arabidopsis thaliana
NYHDYCKCCGCCGYH
DRCGGCGGMGRHDRN		 Dap-seq
OMalley et al.(2016)
ERF8_col_a 		0.707 0.816
ERF8
M06587_2.00 		Arabidopsis thaliana
HNNHDSCGCCGYCRHHDN
NHDDYGRCGGCGSHDNND		 Dap-seq
OMalley et al.(2016)
ERF8_colamp_a 		0.707 0.816
ERF4
M01616_2.00 		Arabidopsis thaliana
VCGCCGCC
GGCGGCGB		 PBM
Weirauch et al.(2014)
pTH8156 		0.703 0.816
ERF4
M06616_2.00 		Arabidopsis thaliana
YCDCCGCCGCCRHHD
HDDYGGCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF4_col_a 		0.703 0.816
ERF4
M06617_2.00 		Arabidopsis thaliana
NHNNHNSCGCCGYCRHHDNN
NNHDDYGRCGGCGSNDNNDN		 Dap-seq
OMalley et al.(2016)
ERF4_colamp_a 		0.703 0.816
ERF4_TOBAC
M09728_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ERF3_02 		0.697 0.796
ERF094
M01602_2.00 		Arabidopsis thaliana
VGCCGCCD
HGGCGGCB		 PBM
Weirauch et al.(2014)
pTH8276 		0.696 0.694
PK19363.1
M01100_2.00 		Cannabis sativa
NMGCCGHMNN
NNKDCGGCKN		 PBM
Lambert et al.(2019)
pTH10138 		0.691 0.776
PK19363.1
M01643_2.00 		Cannabis sativa
CGCCGYCD
HGRCGGCG		 PBM
Weirauch et al.(2014)
pTH9609 		0.691 0.776
ERF9
M06670_2.00 		Arabidopsis thaliana
YCDCCGCCGYCDHHDYHDYHN
NDRHDRHDDHGRCGGCGGHGR		 Dap-seq
OMalley et al.(2016)
ERF9_col_a 		0.690 0.816
ERF9
M06671_2.00 		Arabidopsis thaliana
NNHDSCGCCGYCRHWDN
NHWDYGRCGGCGSHDNN		 Dap-seq
OMalley et al.(2016)
ERF9_colamp_a 		0.690 0.816
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ga00485.1.p AP2 132 183

Links

Other AP2 family TFs
Other Panicum virgatum TFs

628 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30178.m000862 Ricinus communis 30178.m000862 N
cassava19692.m1 Manihot esculenta cassava19692.m1 N
cassava27410.m1 Manihot esculenta cassava27410.m1 N
cassava41407.m1 Manihot esculenta cassava41407.m1 N
Ciclev10016736m.g Citrus clementina Ciclev10016736m.g N
Cucsa.094760 Cucumis sativus Cucsa.094760 N
evm.TU.supercontig_8.51 Carica papaya evm.TU.supercontig_8.51 N
evm.TU.supercontig_9.294 Carica papaya evm.TU.supercontig_9.294 N
GLYMA13G41920 Glycine max GLYMA13G41920 N
GLYMA15G03470 Glycine max GLYMA15G03470 N
Gorai.N002500 Gossypium raimondii Gorai.N002500 N
MDP0000846736 Malus domestica MDP0000846736 N
MTR_2g098880 Medicago truncatula MTR_2g098880 N
Pm022169 Prunus mume Pm022169 N
POPTR_0002s24030 Populus trichocarpa POPTR_0002s24030 N
POPTR_0007s01940 Populus trichocarpa POPTR_0007s01940 N
PRUPE_ppa010254mg Prunus persica PRUPE_ppa010254mg N
PRUPE_ppa018791mg Prunus persica PRUPE_ppa018791mg N
SapurV1A.0071s0650 Salix purpurea SapurV1A.0071s0650 N
SapurV1A.0834s0150 Salix purpurea SapurV1A.0834s0150 N
TCM_002654 Theobroma cacao TCM_002654 N
TCM_020030 Theobroma cacao TCM_020030 N
VIT_00s0174g00140 Vitis vinifera VIT_00s0174g00140 N
VIT_05s0102g00410 Vitis vinifera VIT_05s0102g00410 N