Pavir.J30447 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J30447 T009630_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.723 0.940
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.709 0.900
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.690 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J30447.1.p AP2 33 84

Links

Other AP2 family TFs
Other Panicum virgatum TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R009770 Calypte anna Aan_R009770 N 0.000
Afo_R014912 Aptenodytes forsteri Afo_R014912 N 0.000
Alligator_sinensis_CCG001918.1 Alligator sinensis Alligator_sinensis_CCG001918.1 N 0.000
Brh_R013449 Buceros rhinoceros Brh_R013449 N 0.000
ENSAMEG00000015958 Ailuropoda melanoleuca ENSAMEG00000015958 N 0.000
ENSAMXG00000004338 Astyanax mexicanus ENSAMXG00000004338 N 0.000
ENSAPLG00000007996 Anas platyrhynchos ENSAPLG00000007996 N 0.000
ENSCAFG00000000207 Canis familiaris ENSCAFG00000000207 N 0.000
ENSCAFG00000029259 Canis familiaris ENSCAFG00000029259 N 0.000
ENSCSAG00000016709 Chlorocebus sabaeus ENSCSAG00000016709 N 0.000
ENSFALG00000011864 Ficedula albicollis ENSFALG00000011864 N 0.000
ENSGMOG00000019484 Gadus morhua ENSGMOG00000019484 N 0.000
ENSLACG00000000361 Latimeria chalumnae ENSLACG00000000361 N 0.000
ENSLOCG00000016230 Lepisosteus oculatus ENSLOCG00000016230 N 0.000
ENSMEUG00000006043 Macropus eugenii ENSMEUG00000006043 N 0.000
ENSMPUG00000014801 Mustela putorius furo ENSMPUG00000014801 N 0.000
ENSNLEG00000014649 Nomascus leucogenys ENSNLEG00000014649 N 0.000
ENSOARG00000014646 Ovis aries ENSOARG00000014646 N 0.000
ENSONIG00000000447 Oreochromis niloticus ENSONIG00000000447 N 0.000
ENSP00000237264 Macaca fascicularis ENSP00000237264 N 0.000
ENSP00000237264-D1 Bos grunniens ENSP00000237264-D1 N 0.000
ENSPANG00000020089 Papio anubis ENSPANG00000020089 N 0.000
ENSPFOG00000010866 Poecilia formosa ENSPFOG00000010866 N 0.000
ENSPMAG00000002663 Petromyzon marinus ENSPMAG00000002663 N 0.000
ENSPPYG00000017023 Pongo abelii ENSPPYG00000017023 N 0.000
ENSPSIG00000003645 Pelodiscus sinensis ENSPSIG00000003645 N 0.000
ENSSHAG00000005937 Sarcophilus harrisii ENSSHAG00000005937 N 0.000
ENSSTOG00000006786 Ictidomys tridecemlineatus ENSSTOG00000006786 N 0.000
ENSTSYG00000005756 Tarsius syrichta ENSTSYG00000005756 N 0.000
ENSXMAG00000004323 Xiphophorus maculatus ENSXMAG00000004323 N 0.000
Gfo_R006438 Geospiza fortis Gfo_R006438 N 0.000
Myotis_brandtii_TBPL1_10035691 Myotis brandtii Myotis_brandtii_TBPL1_10035691 N 0.000
Pvit_15344 Pogona vitticeps Pvit_15344 N 0.000
Tal_R007437 Tyto alba Tal_R007437 N 0.000
tbpl1 Tetraodon nigroviridis ENSTNIG00000006808 N 0.000
TBPL1 Sus scrofa ENSSSCG00000022387 N 0.000
TBPL1 Tupaia belangeri ENSTBEG00000013148 N 0.000
TBPL1 Taeniopygia guttata ENSTGUG00000011544 N 0.000
tbpl1 Tetraodon nigroviridis ENSTNIG00000016325 N 0.000
tbpl1 Takifugu rubripes ENSTRUG00000003677 N 0.000
TBPL1 Tursiops truncatus ENSTTRG00000009662 N 0.000
TBPL1 Vicugna pacos ENSVPAG00000006272 N 0.000
TBPL1 Ochotona princeps ENSOPRG00000017268 N 0.000
tbpl1 Xenopus tropicalis XB-GENE-488460 N 0.000
Tbpl1 Rattus norvegicus ENSRNOG00000011114 N 0.000
TBPL1 Bos taurus ENSBTAG00000035370 N 0.000
TBPL1 Choloepus hoffmanni ENSCHOG00000007544 N 0.000
TBPL1 Callithrix jacchus ENSCJAG00000002794 N 0.000
TBPL1 Cavia porcellus ENSCPOG00000011899 N 0.000
tbpl1 Danio rerio ENSDARG00000036868 N 0.000
TBPL1 Dasypus novemcinctus ENSDNOG00000048107 N 0.000
TBPL1 Equus caballus ENSECAG00000019486 N 0.000
TBPL1 Felis catus ENSFCAG00000022687 N 0.000
TBPL1 Homo sapiens ENSG00000028839 N 0.000
tbpl1 Gasterosteus aculeatus ENSGACG00000010959 N 0.000
TBPL1 Gallus gallus ENSGALG00000013981 N 0.000
TBPL1 Gorilla gorilla ENSGGOG00000028298 N 0.000
TBPL1 Meleagris gallopavo ENSMGAG00000013114 N 0.000
TBPL1 Myotis lucifugus ENSMLUG00000002050 N 0.000
TBPL1 Monodelphis domestica ENSMODG00000017515 N 0.000
Tbpl1 Mus musculus ENSMUSG00000071359 N 0.000
TBPL1 Ornithorhynchus anatinus ENSOANG00000013097 N 0.000
TBPL1 Oryctolagus cuniculus ENSOCUG00000007091 N 0.000
TBPL1 Anolis carolinensis ENSACAG00000000340 N 0.000
TBPL1 Procavia capensis ENSPCAG00000001342 N 0.000
TBPL1 Pan troglodytes ENSPTRG00000018624 N 0.000
TBPL1 Pteropus vampyrus ENSPVAG00000000468 N 0.000
TBPL1 Sorex araneus ENSSARG00000005911 N 0.000
tbpl1.L Xenopus laevis XB-GENE-865785 N 0.000