Pavir.J30447 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J30447 T009630_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.723 0.940
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.709 0.900
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.690 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J30447.1.p AP2 33 84

Links

Other AP2 family TFs
Other Panicum virgatum TFs

102 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.736
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.736
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.736
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.736
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.736
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.736
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.736
OS02G0767800 Oryza sativa OS02G0767800 I 0.736
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.736
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.736
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.735
F775_17148 Aegilops tauschii F775_17148 I 0.735
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.732
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.730
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.725
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.724
ERF014 Arabidopsis thaliana AT1G44830 D 0.723
Bo6g004620 Brassica oleracea Bo6g004620 I 0.723
Bra040309 Brassica rapa Bra040309 I 0.723
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.723
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.723
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.723
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.723
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.723
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.723
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.723
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.723
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.723
TCM_035077 Theobroma cacao TCM_035077 I 0.723
Ca_25824 Cicer arietinum Ca_25824 I 0.723
Cla014165 Citrullus lanatus Cla014165 I 0.723
Pm004870 Prunus mume Pm004870 I 0.723
29908.m006165 Ricinus communis 29908.m006165 I 0.723
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I 0.723
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.723
mgf021045m Mimulus guttatus mgf021045m I 0.723
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.723
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.723
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.723
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.723
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.723
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.723
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.723
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.723
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.723
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.723
MDP0000120147 Malus domestica MDP0000120147 I 0.723
MDP0000923690 Malus domestica MDP0000923690 I 0.723
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.723
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.723
PK16069.1 Cannabis sativa PK16069.1 I 0.723
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.721
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.721
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.720
Cla023512 Citrullus lanatus Cla023512 I 0.720
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.720
Bo6g121400 Brassica oleracea Bo6g121400 I 0.717
Bra015660 Brassica rapa Bra015660 I 0.717
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.717
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.717
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.717
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.717
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I 0.716
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.716
Si007977m.g Setaria italica Si007977m.g I 0.715
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.715
Pavir.J26231 Panicum virgatum Pavir.J26231 I 0.715
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.714
cassava44357.m1 Manihot esculenta cassava44357.m1 I 0.713
F775_20580 Aegilops tauschii F775_20580 I 0.712
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.711
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.711
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.710
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I 0.710
ERF012 Arabidopsis thaliana AT1G21910 D 0.709
Bra036022 Brassica rapa Bra036022 I 0.709
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.709
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.709
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.709
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.709
Carubv10010179m.g Capsella rubella Carubv10010179m.g I 0.709
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.709
Bo5g034880 Brassica oleracea Bo5g034880 I 0.708
mgf023290m Mimulus guttatus mgf023290m I 0.707
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.704
Bo8g071150 Brassica oleracea Bo8g071150 I 0.699
Bra016400 Brassica rapa Bra016400 I 0.699
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.696
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.696
Si039170m.g Setaria italica Si039170m.g I 0.696
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.696
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I 0.696
MDP0000319736 Malus domestica MDP0000319736 I 0.695
ERF013 Arabidopsis thaliana AT1G77640 D 0.690
Bra012298 Brassica rapa Bra012298 I 0.690
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.690
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.690
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.688
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.686
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.684
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.679
Carubv10020777m.g Capsella rubella Carubv10020777m.g I 0.679