Bra012298 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra012298 T001073_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.780 0.922
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.763 0.882
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.744 0.882
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012298.1-P AP2 40 91

Links

Other AP2 family TFs
Other Brassica rapa TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF012 Arabidopsis thaliana AT1G21910 D 0.780
Bo8g071150 Brassica oleracea Bo8g071150 I 0.780
Bra016400 Brassica rapa Bra016400 I 0.780
Bra036022 Brassica rapa Bra036022 I 0.780
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.780
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.780
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.780
Carubv10010179m.g Capsella rubella Carubv10010179m.g I 0.780
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.780
Bo5g034880 Brassica oleracea Bo5g034880 I 0.778
Bo6g121400 Brassica oleracea Bo6g121400 I 0.772
Bra015660 Brassica rapa Bra015660 I 0.772
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.772
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.770
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.770
ERF014 Arabidopsis thaliana AT1G44830 D 0.763
Bo6g004620 Brassica oleracea Bo6g004620 I 0.763
Bra040309 Brassica rapa Bra040309 I 0.763
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.763
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.763
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.763
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.763
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.763
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.763
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.763
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.763
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.763
TCM_035077 Theobroma cacao TCM_035077 I 0.763
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.763
Ca_25824 Cicer arietinum Ca_25824 I 0.763
Cla014165 Citrullus lanatus Cla014165 I 0.763
Cla023512 Citrullus lanatus Cla023512 I 0.763
Pm004870 Prunus mume Pm004870 I 0.763
29908.m006165 Ricinus communis 29908.m006165 I 0.763
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I 0.763
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.763
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.763
mgf021045m Mimulus guttatus mgf021045m I 0.763
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.763
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.763
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.763
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.763
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.763
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.763
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.763
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.763
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.763
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.763
MDP0000120147 Malus domestica MDP0000120147 I 0.763
MDP0000923690 Malus domestica MDP0000923690 I 0.763
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.763
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.763
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.762
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I 0.757
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.757
cassava44357.m1 Manihot esculenta cassava44357.m1 I 0.753
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.751
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.750
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.750
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.750
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.750
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.750
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.750
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.750
OS02G0767800 Oryza sativa OS02G0767800 I 0.750
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.750
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.750
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.750
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I 0.750
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.749
F775_17148 Aegilops tauschii F775_17148 I 0.749
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.749
mgf023290m Mimulus guttatus mgf023290m I 0.747
ERF013 Arabidopsis thaliana AT1G77640 D 0.744
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.744
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.744
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.743
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.742
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.742
Carubv10020777m.g Capsella rubella Carubv10020777m.g I 0.742
F775_20580 Aegilops tauschii F775_20580 I 0.741
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.741
Si007977m.g Setaria italica Si007977m.g I 0.741
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.741
Pavir.J26231 Panicum virgatum Pavir.J26231 I 0.741
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.740
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.740
MDP0000319736 Malus domestica MDP0000319736 I 0.736
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.735
Bo7g059990 Brassica oleracea Bo7g059990 I 0.728
PK16069.1 Cannabis sativa PK16069.1 I 0.727
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.726
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.725
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.725
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.721
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.721
Si039170m.g Setaria italica Si039170m.g I 0.721
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.721
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I 0.721
BGIOSGA022531 Oryza indica BGIOSGA022531 I 0.718
OBART06G07000 Oryza barthii OBART06G07000 I 0.718
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I 0.718
OMERI06G08130 Oryza meridionalis OMERI06G08130 I 0.718
ONIVA06G08290 Oryza nivara ONIVA06G08290 I 0.718
OPUNC06G06600 Oryza punctata OPUNC06G06600 I 0.718
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I 0.718
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.714
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.706
BRADI1G67350 Brachypodium distachyon BRADI1G67350 I 0.704
Traes_4AS_18663793B Triticum aestivum Traes_4AS_18663793B I 0.704
Traes_4BL_762F09E09 Triticum aestivum Traes_4BL_762F09E09 I 0.704
Traes_4DL_FB8B5AAEB Triticum aestivum Traes_4DL_FB8B5AAEB I 0.704
GRMZM2G084264 Zea mays GRMZM2G084264 I 0.702
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.700
OB03G21640 Oryza brachyantha OB03G21640 I 0.699
BGIOSGA011061 Oryza indica BGIOSGA011061 I 0.697
LPERR03G10190 Leersia perrieri LPERR03G10190 I 0.697
OBART03G11470 Oryza barthii OBART03G11470 I 0.697
OGLUM03G11430 Oryza glumaepatula OGLUM03G11430 I 0.697
OMERI03G10750 Oryza meridionalis OMERI03G10750 I 0.697
ONIVA03G12660 Oryza nivara ONIVA03G12660 I 0.697
OPUNC03G11030 Oryza punctata OPUNC03G11030 I 0.697
ORGLA03G0110800 Oryza glaberrima ORGLA03G0110800 I 0.697
ORUFI03G11820 Oryza rufipogon ORUFI03G11820 I 0.697
OS03G0263000 Oryza sativa OS03G0263000 I 0.697
Pavir.J30447 Panicum virgatum Pavir.J30447 I 0.690