Pavir.Ib01111 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ib01111 T009528_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.754 0.900
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.740 0.860
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.721 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib01111.1.p AP2 34 85

Links

Other AP2 family TFs
Other Panicum virgatum TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.802
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.802
Si039170m.g Setaria italica Si039170m.g I 0.802
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.802
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.794
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.755
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.755
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.755
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.755
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.755
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.755
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.755
OS02G0767800 Oryza sativa OS02G0767800 I 0.755
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.755
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.755
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.755
ERF014 Arabidopsis thaliana AT1G44830 D 0.754
Bo6g004620 Brassica oleracea Bo6g004620 I 0.754
Bra040309 Brassica rapa Bra040309 I 0.754
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.754
F775_17148 Aegilops tauschii F775_17148 I 0.754
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.754
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.754
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.754
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.754
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.754
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.754
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.754
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.754
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.754
TCM_035077 Theobroma cacao TCM_035077 I 0.754
Ca_25824 Cicer arietinum Ca_25824 I 0.754
Cla014165 Citrullus lanatus Cla014165 I 0.754
Pm004870 Prunus mume Pm004870 I 0.754
29908.m006165 Ricinus communis 29908.m006165 I 0.754
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I 0.754
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.754
mgf021045m Mimulus guttatus mgf021045m I 0.754
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.754
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.754
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.754
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.754
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.754
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.754
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.754
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.754
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.754
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.754
MDP0000120147 Malus domestica MDP0000120147 I 0.754
MDP0000923690 Malus domestica MDP0000923690 I 0.754
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.754
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.754
Si007977m.g Setaria italica Si007977m.g I 0.753
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.753
Pavir.J26231 Panicum virgatum Pavir.J26231 I 0.753
BGIOSGA011061 Oryza indica BGIOSGA011061 I 0.752
LPERR03G10190 Leersia perrieri LPERR03G10190 I 0.752
OBART03G11470 Oryza barthii OBART03G11470 I 0.752
OGLUM03G11430 Oryza glumaepatula OGLUM03G11430 I 0.752
OMERI03G10750 Oryza meridionalis OMERI03G10750 I 0.752
ONIVA03G12660 Oryza nivara ONIVA03G12660 I 0.752
OPUNC03G11030 Oryza punctata OPUNC03G11030 I 0.752
ORGLA03G0110800 Oryza glaberrima ORGLA03G0110800 I 0.752
ORUFI03G11820 Oryza rufipogon ORUFI03G11820 I 0.752
OS03G0263000 Oryza sativa OS03G0263000 I 0.752
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.751
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.751
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.751
Cla023512 Citrullus lanatus Cla023512 I 0.751
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.751
cassava44357.m1 Manihot esculenta cassava44357.m1 I 0.750
Bo6g121400 Brassica oleracea Bo6g121400 I 0.749
Bra015660 Brassica rapa Bra015660 I 0.749
F775_20580 Aegilops tauschii F775_20580 I 0.749
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.749
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.749
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.749
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.748
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.748
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.748
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I 0.748
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.748
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.747
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.744
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.742
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.741
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I 0.741
ERF012 Arabidopsis thaliana AT1G21910 D 0.740
Bo5g034880 Brassica oleracea Bo5g034880 I 0.740
Bra036022 Brassica rapa Bra036022 I 0.740
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.740
OB03G21640 Oryza brachyantha OB03G21640 I 0.740
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.740
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.740
Carubv10010179m.g Capsella rubella Carubv10010179m.g I 0.740
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.740
mgf023290m Mimulus guttatus mgf023290m I 0.738
GRMZM2G084264 Zea mays GRMZM2G084264 I 0.733
Bo8g071150 Brassica oleracea Bo8g071150 I 0.730
Bra016400 Brassica rapa Bra016400 I 0.730
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.729
BRADI1G67350 Brachypodium distachyon BRADI1G67350 I 0.727
Traes_4AS_18663793B Triticum aestivum Traes_4AS_18663793B I 0.727
Traes_4BL_762F09E09 Triticum aestivum Traes_4BL_762F09E09 I 0.727
Traes_4DL_FB8B5AAEB Triticum aestivum Traes_4DL_FB8B5AAEB I 0.727
MDP0000319736 Malus domestica MDP0000319736 I 0.726
ERF013 Arabidopsis thaliana AT1G77640 D 0.721
Bra012298 Brassica rapa Bra012298 I 0.721
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.721
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.721
PK16069.1 Cannabis sativa PK16069.1 I 0.718
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.716
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.716
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.711
Carubv10020777m.g Capsella rubella Carubv10020777m.g I 0.711
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.705
BGIOSGA022531 Oryza indica BGIOSGA022531 I 0.702
OBART06G07000 Oryza barthii OBART06G07000 I 0.702
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I 0.702
OMERI06G08130 Oryza meridionalis OMERI06G08130 I 0.702
ONIVA06G08290 Oryza nivara ONIVA06G08290 I 0.702
OPUNC06G06600 Oryza punctata OPUNC06G06600 I 0.702
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I 0.702
Pavir.J30447 Panicum virgatum Pavir.J30447 I 0.696
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.689
Bo7g059990 Brassica oleracea Bo7g059990 I 0.688
GSMUA_Achr10G19460_001 Musa acuminata GSMUA_Achr10G19460_001 I 0.687