cassava28944.valid.m1 (Manihot esculenta)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 cassava28944.valid.m1 T006873_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.796 1.000
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.782 0.960
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.763 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava28944.valid.m1 AP2 20 71

Links

Other AP2 family TFs
Other Manihot esculenta TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF014 Arabidopsis thaliana AT1G44830 D 0.796
Bo6g004620 Brassica oleracea Bo6g004620 I 0.796
Bra040309 Brassica rapa Bra040309 I 0.796
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.796
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.796
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.796
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.796
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.796
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.796
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.796
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.796
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.796
TCM_035077 Theobroma cacao TCM_035077 I 0.796
Ca_25824 Cicer arietinum Ca_25824 I 0.796
Cla014165 Citrullus lanatus Cla014165 I 0.796
Pm004870 Prunus mume Pm004870 I 0.796
29908.m006165 Ricinus communis 29908.m006165 I 0.796
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.796
mgf021045m Mimulus guttatus mgf021045m I 0.796
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.796
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.796
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.796
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.796
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.796
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.796
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.796
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.796
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.796
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.796
MDP0000120147 Malus domestica MDP0000120147 I 0.796
MDP0000923690 Malus domestica MDP0000923690 I 0.796
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.796
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.796
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.795
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.793
Cla023512 Citrullus lanatus Cla023512 I 0.793
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.793
Bo6g121400 Brassica oleracea Bo6g121400 I 0.791
Bra015660 Brassica rapa Bra015660 I 0.791
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.791
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.789
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.789
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I 0.789
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.789
cassava44357.m1 Manihot esculenta cassava44357.m1 I 0.786
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.783
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I 0.783
ERF012 Arabidopsis thaliana AT1G21910 D 0.782
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.782
Bra036022 Brassica rapa Bra036022 I 0.782
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.782
F775_17148 Aegilops tauschii F775_17148 I 0.782
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.782
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.782
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.782
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.782
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.782
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.782
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.782
OS02G0767800 Oryza sativa OS02G0767800 I 0.782
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.782
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.782
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.782
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.782
Carubv10010179m.g Capsella rubella Carubv10010179m.g I 0.782
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.782
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.782
Bo5g034880 Brassica oleracea Bo5g034880 I 0.780
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.780
mgf023290m Mimulus guttatus mgf023290m I 0.780
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.776
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.775
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.773
Si007977m.g Setaria italica Si007977m.g I 0.773
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.773
Pavir.J26231 Panicum virgatum Pavir.J26231 I 0.773
Bo8g071150 Brassica oleracea Bo8g071150 I 0.772
Bra016400 Brassica rapa Bra016400 I 0.772
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.771
F775_20580 Aegilops tauschii F775_20580 I 0.770
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.769
MDP0000319736 Malus domestica MDP0000319736 I 0.768
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.767
ERF013 Arabidopsis thaliana AT1G77640 D 0.763
Bra012298 Brassica rapa Bra012298 I 0.763
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.763
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.763
PK16069.1 Cannabis sativa PK16069.1 I 0.760
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.758
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.758
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.754
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.754
Si039170m.g Setaria italica Si039170m.g I 0.754
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.754
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I 0.754
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.752
Carubv10020777m.g Capsella rubella Carubv10020777m.g I 0.752
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.746
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.739
GRMZM2G084264 Zea mays GRMZM2G084264 I 0.735
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.732
Bo7g059990 Brassica oleracea Bo7g059990 I 0.730
BGIOSGA022531 Oryza indica BGIOSGA022531 I 0.724
OBART06G07000 Oryza barthii OBART06G07000 I 0.724
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I 0.724
OMERI06G08130 Oryza meridionalis OMERI06G08130 I 0.724
ONIVA06G08290 Oryza nivara ONIVA06G08290 I 0.724
OPUNC06G06600 Oryza punctata OPUNC06G06600 I 0.724
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I 0.724
Pavir.J30447 Panicum virgatum Pavir.J30447 I 0.723
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.721
BRADI1G67350 Brachypodium distachyon BRADI1G67350 I 0.710
Traes_4AS_18663793B Triticum aestivum Traes_4AS_18663793B I 0.710
Traes_4BL_762F09E09 Triticum aestivum Traes_4BL_762F09E09 I 0.710
Traes_4DL_FB8B5AAEB Triticum aestivum Traes_4DL_FB8B5AAEB I 0.710
BGIOSGA011061 Oryza indica BGIOSGA011061 I 0.704
LPERR03G10190 Leersia perrieri LPERR03G10190 I 0.704
OBART03G11470 Oryza barthii OBART03G11470 I 0.704
OGLUM03G11430 Oryza glumaepatula OGLUM03G11430 I 0.704
OMERI03G10750 Oryza meridionalis OMERI03G10750 I 0.704
ONIVA03G12660 Oryza nivara ONIVA03G12660 I 0.704
OPUNC03G11030 Oryza punctata OPUNC03G11030 I 0.704
ORGLA03G0110800 Oryza glaberrima ORGLA03G0110800 I 0.704
ORUFI03G11820 Oryza rufipogon ORUFI03G11820 I 0.704
OS03G0263000 Oryza sativa OS03G0263000 I 0.704
OB03G21640 Oryza brachyantha OB03G21640 I 0.692
GSMUA_Achr10G19460_001 Musa acuminata GSMUA_Achr10G19460_001 I 0.682