Thhalv10015252m.g (Eutrema salsugineum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Thhalv10015252m.g T009939_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.839 1.000
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.839 1.000
DREB1C
M01623_2.00 		Arabidopsis thaliana
RCCGACAT
ATGTCGGY		 PBM
Weirauch et al.(2014)
pTH8187 		0.800 0.920
DREB1C
M06639_2.00 		Arabidopsis thaliana
NNNHBRCCGACATNN
NNATGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF2_col_a 		0.800 0.920
DREB1C
M06640_2.00 		Arabidopsis thaliana
NYBRCCGACATVN
NBATGTCGGYVRN		 Dap-seq
OMalley et al.(2016)
CBF2_colamp_a 		0.800 0.920
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.778 0.940
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.778 0.940
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.778 0.940
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.778 0.940
DREB1B
M06643_2.00 		Arabidopsis thaliana
DHBRCCGACRHN
NDYGTCGGYVDH		 Dap-seq
OMalley et al.(2016)
CBF1_col_a 		0.715 0.940
DREB1B
M06644_2.00 		Arabidopsis thaliana
NNNHBRCCGACAWNN
NNWTGTCGGYVDNNN		 Dap-seq
OMalley et al.(2016)
CBF1_colamp_a 		0.715 0.940
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.714 0.800
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.714 0.800
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.701 0.760
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.701 0.760
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.701 0.760
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.701 0.760
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.701 0.760
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.701 0.760
DREB1E
M09709_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_01 		0.700 0.800
Q8S2T3_BRANA
M09745_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF16_01 		0.699 0.880
Q6T3U0_BRANA
M09743_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREBII1_01 		0.699 0.880
Q8S2T5_BRANA
M09746_2.00 		Brassica napus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CBF5_01 		0.693 0.900
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.678 0.760
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10015252m AP2 54 105

Links

Other AP2 family TFs
Other Eutrema salsugineum TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA029546 Oryza indica BGIOSGA029546 N 0.000
BRADI4G33740 Brachypodium distachyon BRADI4G33740 N 0.000
GRMZM2G006578 Zea mays GRMZM2G006578 N 0.000
GRMZM2G060290 Zea mays GRMZM2G060290 N 0.000
GRMZM2G125934 Zea mays GRMZM2G125934 N 0.000
LPERR09G10860 Leersia perrieri LPERR09G10860 N 0.000
MLOC_68986 Hordeum vulgare MLOC_68986 N 0.000
OB09G21260 Oryza brachyantha OB09G21260 N 0.000
OBART09G14730 Oryza barthii OBART09G14730 N 0.000
OGLUM09G15360 Oryza glumaepatula OGLUM09G15360 N 0.000
OMERI09G11450 Oryza meridionalis OMERI09G11450 N 0.000
ONIVA08G17430 Oryza nivara ONIVA08G17430 N 0.000
OPUNC09G13200 Oryza punctata OPUNC09G13200 N 0.000
ORGLA09G0113500 Oryza glaberrima ORGLA09G0113500 N 0.000
ORUFI09G15880 Oryza rufipogon ORUFI09G15880 N 0.000
OS09G0489500 Oryza sativa OS09G0489500 N 0.000
Pavir.Ba01723 Panicum virgatum Pavir.Ba01723 N 0.000
Pavir.Db00756 Panicum virgatum Pavir.Db00756 N 0.000
Pavir.J32240 Panicum virgatum Pavir.J32240 N 0.000
PGSC0003DMG400011430 Solanum tuberosum PGSC0003DMG400011430 I 0.000
Sb02g028380 Sorghum bicolor Sb02g028380 N 0.000
Sb10g024190 Sorghum bicolor Sb10g024190 N 0.000
Si006417m.g Setaria italica Si006417m.g N 0.000
Si029606m.g Setaria italica Si029606m.g N 0.000
Solyc10g078670.1 Solanum lycopersicum Solyc10g078670.1 I 0.000
Traes_5AL_39649C38E Triticum aestivum Traes_5AL_39649C38E N 0.000
Traes_5BL_C08428870 Triticum aestivum Traes_5BL_C08428870 N 0.000
Traes_5DL_1950C1FC2 Triticum aestivum Traes_5DL_1950C1FC2 N 0.000