chr2.CM0608.10.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr2.CM0608.10.nd T010170_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAP2-4
M01612_2.00 		Arabidopsis thaliana
NRCCGHCMNN
NNKGDCGGYN		 PBM
Weirauch et al.(2014)
pTH8092 		0.840 0.920
ERF055
M06577_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_col_a 		0.834 0.920
ERF055
M06578_2.00 		Arabidopsis thaliana
NHDYCACCGHCMHH
DDKGDCGGTGRHDN		 Dap-seq
OMalley et al.(2016)
At1g36060_colamp_a 		0.834 0.920
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.723 0.880
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.723 0.880
WIN1
M01603_2.00 		Arabidopsis thaliana
VCRCCGCNNN
NNNGCGGYGB		 PBM
Weirauch et al.(2014)
pTH7566 		0.690 0.660
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0608.10.nd AP2 74 125

Links

Other AP2 family TFs
Other Lotus japonicus TFs

450 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000004562 Ailuropoda melanoleuca ENSAMEG00000004562 N
ENSCPOG00000004970 Cavia porcellus ENSCPOG00000004970 N
ENSCSAG00000009037 Chlorocebus sabaeus ENSCSAG00000009037 N
ENSMPUG00000017195 Mustela putorius furo ENSMPUG00000017195 N
ENSNLEG00000005337 Nomascus leucogenys ENSNLEG00000005337 N
ENSOARG00000014699 Ovis aries ENSOARG00000014699 N
ENSP00000249910 Macaca fascicularis ENSP00000249910 N
ENSPANG00000015047 Papio anubis ENSPANG00000015047 N
ENSPPYG00000013417 Pongo abelii ENSPPYG00000013417 N
ENSSHAG00000012953 Sarcophilus harrisii ENSSHAG00000012953 N
ENSSTOG00000020663 Ictidomys tridecemlineatus ENSSTOG00000020663 N
ENSTSYG00000011147 Tarsius syrichta ENSTSYG00000011147 N
MBD4 Otolemur garnettii ENSOGAG00000010236 N
MBD4 Bos taurus ENSBTAG00000021645 N
MBD4 Ochotona princeps ENSOPRG00000000473 N
MBD4 Procavia capensis ENSPCAG00000012915 N
MBD4 Pan troglodytes ENSPTRG00000015377 N
MBD4 Pteropus vampyrus ENSPVAG00000005238 N
Mbd4 Rattus norvegicus ENSRNOG00000010919 N
MBD4 Tupaia belangeri ENSTBEG00000003041 N
MBD4 Tursiops truncatus ENSTTRG00000011265 N
MBD4 Vicugna pacos ENSVPAG00000004040 N
MBD4 Oryctolagus cuniculus ENSOCUG00000013006 N
Mbd4 Mus musculus ENSMUSG00000030322 N
MBD4 Monodelphis domestica ENSMODG00000006399 N
MBD4 Macaca mulatta ENSMMUG00000012723 N
MBD4 Myotis lucifugus ENSMLUG00000014766 N
MBD4 Microcebus murinus ENSMICG00000008022 N
MBD4 Loxodonta africana ENSLAFG00000010609 N
MBD4 Gorilla gorilla ENSGGOG00000010698 N
MBD4 Homo sapiens ENSG00000129071 N
MBD4 Felis catus ENSFCAG00000000083 N
MBD4 Erinaceus europaeus ENSEEUG00000011459 N
MBD4 Equus caballus ENSECAG00000022106 N
MBD4 Dasypus novemcinctus ENSDNOG00000049619 N
MBD4 Callithrix jacchus ENSCJAG00000017293 N
MBD4 Canis familiaris ENSCAFG00000004867 N
Myotis_brandtii_MBD4_10028283 Myotis brandtii Myotis_brandtii_MBD4_10028283 N